| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nther_0600 |
|---|
| Symbol | |
|---|
| ID | 6316727 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Natranaerobius thermophilus JW/NM-WN-LF |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010718 |
|---|
| Strand | + |
|---|
| Start bp | 624022 |
|---|
| End bp | 625776 |
|---|
| Gene Length | 1755 bp |
|---|
| Protein Length | 584 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 642642983 |
|---|
| Product | choline/carnitine/betaine transporter |
|---|
| Protein accession | YP_001916783 |
|---|
| Protein GI | 188585238 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1292] Choline-glycine betaine transporter |
|---|
| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000000000857259 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 70 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAAAA TTGAGGTTAG TAAAAAAGAA CTCGAAAAAA AGTTATTCGA CAGAAACTAC
ACAAAGTACG GTCTTGACTT AAATCCAGTT GTTTCCTTTG GAAGTGGAAT TTTTATTATC
TTGTTTTCAC TGTATGCTCT GTTGGATCTC GATAGAGCCA ATCAAGTTTT TCAATTTGTT
AACGAAACAA TTGTAACTCG ATTTGATTGG GTATTTATTA TGTCAAGTAA TTTTTTTATC
TTAGTTTGTC TATATCTGGC CTTTTCCAAG CTTGGTAATG TTAAAATAGG TGGCCTTAAC
AGTGAACCGG AATTTTCTAA TTTTGCTTGG TATTCAATGC TTATTTCAGC AGGTATGGGA
ATAGGATTGA TGTTTTGGGC TGTAGGTGAA CCTCTCCATC ATTTCATGGA AGCCCCGCCA
ATCTTCACAA GTACCAGTGC TGATAAAGCA GCCCTTGCTA CTACTTTCTT TCATTGGGGA
TTGCATCCCT GGGGGGTCTA TGCCTTATTA GCTTTAGCTC TAGCTTTTTT TGCATATAAT
AGGAAGCTGC CTTTATCACT TAGGTCGGTA TTCTATCCTC TATTTAAAGA AAAAGTGTAC
GGTACCCTGG GAGATGTAAT TGACACCTTT GCCGTGTTAT CGACATTGTT TGGACTAGCT
ACTTCTTTGG GACTAGGAAT CAAGCAAATC AATAGTGGTC TCGATTACTT ATTCGGAATA
GGTTTTAATG TACAAATGCA GGTAACTTTA ATAGCCATTA TCACTTTATT GGCTACTATA
TCTGTAATTT CAGGGATTCA CAAAGGTGTC AGGTTTTTGT CAGAACTTAA CATAAGACTA
GCCTTTATAT TTATGATTGC AATATTTTTA TTAGGACCGA CTACTTATAT TCTGCGTTTA
TTTTCAAACT CTGTAGGCCT ATATTTCAGT AATATTGTAG AATATGCTTC CTTTATTAAC
ATTGATGGGG GAAGCTGGCA GGGAGATTGG TCTATATTTT ATTTGGCCTG GTGGATTTCC
TGGTCCCCCT TTGTTGGAAT GTTCATTGCT AGAATTTCTC GCGGAAGAAC TATCAGAGAA
TTTATCTTAG GTGTTTTGAT TGTTCCTTCC CTGCTGTCTT TCTTCTGGTT GTCTGTTTTT
GGGGGTACTT CCATTTTTTT AGATGGACAA GCAGGTGGAG CTTTATTTGA GACAGTACAA
GACGATTATC CTGTGGCTTT ATTTGAAATG ATCGATTTAC TACCAATGCC ATTTTTGGCT
GGAGCACTGC GGGTATTAAT GTTTATTTTA GTGATAGCGC TAGTATCATC TTATTTTGTC
ACATCTTCTG ATTCGGGCTC ATTGGTAGTA GACAAAATTA CATCTAGCGG CAAAATCAAC
ACACCTAAAA AACAAAGAGT TTTTTGGGCC TGTCTGGAGG GACTAGTTGC TGCTACACTG
TTACTGATCG GTGGTGAAAA GGCGCTGGAT ACTCTACAGA CGGCCGTTAT CAGTGCTGGA
CTACCCTTGG CTTTTATTTT GACAGTTATG GCCATTTCAT TAATTAAAGG AATCACCGTT
ACCCATAAAA AGCAGAAAAA GATCAGGGAT AAAAGAAAAT TTGAAGAACT CTTTGAAGAT
CTTGAAGAAG AACGGGAACA GGATCAGGAG CAAGGGGAAG GACAGCATAC GAGTGAAACT
GAAACAGCAG TTAAAAAAAC AGATCATCAA GCTGAACCAG AAGTATCACC TAATGTTACA
CCACCACAAG ATTAA
|
|---|
| Protein sequence | MEKIEVSKKE LEKKLFDRNY TKYGLDLNPV VSFGSGIFII LFSLYALLDL DRANQVFQFV
NETIVTRFDW VFIMSSNFFI LVCLYLAFSK LGNVKIGGLN SEPEFSNFAW YSMLISAGMG
IGLMFWAVGE PLHHFMEAPP IFTSTSADKA ALATTFFHWG LHPWGVYALL ALALAFFAYN
RKLPLSLRSV FYPLFKEKVY GTLGDVIDTF AVLSTLFGLA TSLGLGIKQI NSGLDYLFGI
GFNVQMQVTL IAIITLLATI SVISGIHKGV RFLSELNIRL AFIFMIAIFL LGPTTYILRL
FSNSVGLYFS NIVEYASFIN IDGGSWQGDW SIFYLAWWIS WSPFVGMFIA RISRGRTIRE
FILGVLIVPS LLSFFWLSVF GGTSIFLDGQ AGGALFETVQ DDYPVALFEM IDLLPMPFLA
GALRVLMFIL VIALVSSYFV TSSDSGSLVV DKITSSGKIN TPKKQRVFWA CLEGLVAATL
LLIGGEKALD TLQTAVISAG LPLAFILTVM AISLIKGITV THKKQKKIRD KRKFEELFED
LEEEREQDQE QGEGQHTSET ETAVKKTDHQ AEPEVSPNVT PPQD
|
|---|
| |