| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_4785 |
|---|
| Symbol | |
|---|
| ID | 4595382 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardioides sp. JS614 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008697 |
|---|
| Strand | - |
|---|
| Start bp | 102420 |
|---|
| End bp | 104594 |
|---|
| Gene Length | 2175 bp |
|---|
| Protein Length | 724 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639772572 |
|---|
| Product | helicase domain-containing protein |
|---|
| Protein accession | YP_919232 |
|---|
| Protein GI | 119714090 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.0599344 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.582969 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGATGA TCGACCCGCG CCGATTCTCC CGTGGCGCGC TGCTGGACTC CAAGGCACTC
AAGGACGTCA CCGTCCGACG GCTCAAGACC GACCTGTCCG GCAAGGGCTT CAAGAAGCGC
AAGGTCGACG CCCTCGACTT CACCCCGTCG GACAGTGAGC AGGAGAAGTT CTCTCTGCTG
GACGAGATCG TTACCAAGAG CGCCAAGCAG AACGGCACCA AGCCGACCGG CGACATCGTG
ACGATGTTGT TGAAGAAGAG GTTCTTGTCC AGCCCCTTCG CGTTCGGCAT GACCCTGAGC
CACTACTTGT CCTCGAGGGC CGGGCGTGGC CTGTCCGAGG ACGACTACGA CGACGTCTTC
GGTGAGGGTC AGGCCGACGA GGAAGAAGGC CTGTGGGAGC AGGACGAGGC CGAGCGACTC
CGCGAGTCCA AGGGCTCTGA CCCGTTGGTC GCCGCGGAGC CCGGCCAGCT CGAATCACTT
ATGGAGTGGG GGTTGAGCTA CGAGAGCCGC GCCGACTCCC GCCTCGACCG CCTCATCGGA
TTCCTCGACG CGGTGTGCCG CCCGGACGGC AAGAGCTGGT CCAACGAGCG CGTCGTGATC
TTCACCGAGT ACGCCCACAC CGTCGACTGG CTTACCCGCG TCCTGCGCCA GCGCGGCTAC
GTCGAGGACC GACTGGCCGT GATCCAGGGC TCGACCAAGC CTGAGGACCG CGAATACATT
CGCTCGCAGT TCACCGCCGA TCCGGCCAAG GAGCTGGTCC GCGTCCTGCT CGCCACCGAC
GCCGCCGGTG AGGGCATTGA CCTCCAGACC CACTGCCATC GGCTGGTGAA CTTCGACATC
CCGTTCAACC CGTCCCGGTT GGAGCAGCGC ATCGGCCGCA TCGACCGCTA CGGCCAGACC
GATGAACCCC AGGTCTTCCA CTTCGTCCCC GTCGCAGGCG CCTCTACCTA TGCGGCGGAC
GTGGACTTCA TGTCGCGCAT CGCCCGCAAG ATTGCCCAGG TCCAATACGA CCTCGGCTCG
GCCAACCAAG TCGTCGGCGA GGAGATCCAG ACGCACTTCG CCCGCCGCAC CCCTGCCAAG
GCGAAGGCCA AGGGAGTCGA CACCAACGAG GTCATCAACG CCGCGCTTGC CGGCGGGTTG
GAGCTGAACA CTCGGCTGAC CCAGTTGGAG GTGGGGTACG ACGCCTCCCG CACCGAGATG
CACCTCGACC CCGCCAACCT TCGTCGCGTG GTCGACACCG CCCTGCGGAT CAACCACCAG
TCCCCGCTCG TGCCCAACCA CAAGTTCGCC CAAGACACCG ACGCCGAGGT GTACGACCTC
CCGACCCTGA CCACGGGCTG GCATGACACG CTGCGAGGGC TCGACACTCG ACTCAAGCCC
GGTGTGCAAC GCCCGATCAC GTTTGACGCC AACGCAGCCG AGGGCCGCGA CGATCTTGTT
TACGTTCACC TCGGGCACCC GATCGTCCAG AAGGCGCAGC GCCTGCTGCG CCGATCCCTT
TGGAGCGTCG ATTCGCCACT AAGTCGCGTC ACTGCCGTTG TGGTCGATGA CCTGGAGGAG
TCCTTCGTCG CGGCCGTCAC CCGCATGGTC CTCGTTGGGC GAGGCGGCAT CCGCCTCCAC
GAAGAAGTGT TCCTCGCCGG CGTTCGTGTG AGGGGACGCC GTGCGATGGC CGAGGAAAAG
GCCGAGGCCG CGCTCGACGA CGCACTCGAC CGCGAGCGGC TGGCACTGGC CGACTCGCAG
GTGCGCGACC AACTCTGCGA CCTATGGAAC GTGCCCGACG CACCGCTGCG ACTTCGCTTG
GAAGAGTCGA TGCAGGCTCG CGCAGGACGT CGCCACGAGC TCGTCATGGA ACAGCTCACC
AAGCGGCAAG AGGCCGACAC CCAACGCGCC CACGAGATCT TCGCCGCCTT CCGCACCAAC
CTCCGCGAGT CGCTCGCGGC GCTCAAGGCC GCCGAAGACG AGGCCCAAGG GCAGTTGTTC
TCCGACCCCG ACCAGCAGCG CCAGTGGAGG CGTGACGTCG AGGCGATGAC CCGGCGTCTC
GAAGAGCTTG ACGACGAAGA AGCACGCGAG ATCGCCGCCA TCACCGACCG GTATGCCGGG
GTGAAGCCAC ACACCACTGC CGCAGCGGTC GTGTTTGCGC TGACCCGCTC CGACGCCGAC
GGGTGGATCG ACTGA
|
|---|
| Protein sequence | MEMIDPRRFS RGALLDSKAL KDVTVRRLKT DLSGKGFKKR KVDALDFTPS DSEQEKFSLL
DEIVTKSAKQ NGTKPTGDIV TMLLKKRFLS SPFAFGMTLS HYLSSRAGRG LSEDDYDDVF
GEGQADEEEG LWEQDEAERL RESKGSDPLV AAEPGQLESL MEWGLSYESR ADSRLDRLIG
FLDAVCRPDG KSWSNERVVI FTEYAHTVDW LTRVLRQRGY VEDRLAVIQG STKPEDREYI
RSQFTADPAK ELVRVLLATD AAGEGIDLQT HCHRLVNFDI PFNPSRLEQR IGRIDRYGQT
DEPQVFHFVP VAGASTYAAD VDFMSRIARK IAQVQYDLGS ANQVVGEEIQ THFARRTPAK
AKAKGVDTNE VINAALAGGL ELNTRLTQLE VGYDASRTEM HLDPANLRRV VDTALRINHQ
SPLVPNHKFA QDTDAEVYDL PTLTTGWHDT LRGLDTRLKP GVQRPITFDA NAAEGRDDLV
YVHLGHPIVQ KAQRLLRRSL WSVDSPLSRV TAVVVDDLEE SFVAAVTRMV LVGRGGIRLH
EEVFLAGVRV RGRRAMAEEK AEAALDDALD RERLALADSQ VRDQLCDLWN VPDAPLRLRL
EESMQARAGR RHELVMEQLT KRQEADTQRA HEIFAAFRTN LRESLAALKA AEDEAQGQLF
SDPDQQRQWR RDVEAMTRRL EELDDEEARE IAAITDRYAG VKPHTTAAAV VFALTRSDAD
GWID
|
|---|
| |