Gene Noca_4407 details

Gene Information

• Locus tag: Noca_4407
• ID: 4596925
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nocardioides sp. JS614
• Kingdom: Bacteria
• Replicon accession: NC_008699
• Strand: -
• Start bp: 4663143
• End bp: 4664984
• Gene Length: 1842 bp
• Protein Length: 613 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 639779017
• Product: SSS family solute/sodium (Na+) symporter
• Protein accession: YP_925591
• Protein GI: 119718626
• COG category: [E] Amino acid transport and metabolism; [R] General function prediction only
• COG ID: [COG0591] Na+/proline symporter
• TIGRFAM ID: [TIGR00813] transporter, SSS family

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.0343463
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGCCGCCGG ACGTTTGTGC GTCCGGACGT CCGGGCACCG GACGTGGTGG TCCGTCCGGG 
CTGCGTCACC GAGGGGAACG AAAGGTCTTC ACCATGGCGA GTCCGACCGT CCTGGCCACC 
GACACGATCA TCTCGGCCAA CGCCGTCGAC TACGTGATCG TCGCCCTGTA CTTCGCGGTC 
GTGCTCGGCA TCGGGGTCGT GGCGCGCCGC CAGATCTCCG ACTCCGTCGA CTTCTTCCTC 
TCCGGCCGCT CCCTGCCCGC CTGGGTCACC GGGCTCGCCT TCATCTCCGC GAACCTCGGC 
GCAGTCGAGA TCATGGGGAT GTCGGCATCG GGAGCCGAGT TCGGGCTGCC GACCGTCCAC 
TACTTCTGGA TCGGCGCGAT CCCCGCGATG CTGTTCCTGG GCGTCGTGAT GATGCCCTTC 
TACTACGGCT CCAAGGTCCG CTCGGTCCCC GAGTTCATGC GCCGCCGGTT CGGCACCGGT 
GCGCACCTGG TCAACGCCGT CTCGTTCGCG GTCGCGCAGC TGCTGATCGC CGGCATCAAC 
CTGTTCCTCC TCGGCAGCAT CGTGCACGCG CTGCTGGGCT GGCCGCTGTG GGTGGCGCTG 
ATCGTCGCGG CCGCGATCGT GCTCTCCTAC ATCACGCTCG GCGGGCTGAG CGCGGCGATC 
TACAACGAGG TGCTGCAGTT CTTCGTGATC GTCGCGGGCC TGCTGCCGCT GACCCTGATC 
GGGCTGCACC GCATCGGCGG CTGGGGCGGG CTGACCGACA AGATCACCGA GGCCGCCCAG 
GCCCACCCCG ACGCCATCCC GCCGGCCGAC CAGCAGCTGA ACTCCTGGCC GGGCCTCCCG 
CTGACCGGGT TCGACTCCTC GCTGCTGTCG GTGATCGGGA TCGTCTTCGG TCTCGGGTTC 
GTGCTGTCCT TCGGCTACTG GACCACCAAC TTCGTCGAGG TCCAGCGCGC GATGGCCTCC 
AACTCGATCT CCTCGGCCCG CAAGACGCCG ATCATCGGCG CGTTCCCGAA GATGTTCGTC 
CCCTTCATCA CGATCATCCC CGGCATGATC GCCGCCGTCC TCGTCACCGA GATCGGCAAG 
GTGAAGGCAG GTCAGAGCGT GCCCGGCGGA GCGTCGGGCG ACGGGGTCGC CTACAACGAC 
GCGCTGCTCT ACCTGATGCG CGACGTGCTG CCCAACGGGC TGCTCGGCCT GGCGATCACC 
GGCCTGTTGG CCGCGTTCAT GGCCGGCATG GCCGCGAACG TCTCCGCGTT CAACACCGTG 
TTCAGCTACG ACCTGTGGCA GCAGTACGTC GTCAAGGACC GCGACGACCA CTACTACCTG 
GTGATCGGCC GGATCGCGAC GGTGGCGGCG ACCGTGGTCG CGATCTTCAC CGCCGGCCTG 
GCCAGCAACT TCAGCAACAT CATGAACTAC CTCCAGGTGC TGTTCGGGTT CTTCAACGCG 
CCGTTGTTCG CGACCTTCAT CCTCGGCATG TTCTGGAAGC GGATGTCCGC GGCCGCCGGC 
TGGGTCGGCC TCGTGGCCGG CACGGTCTCG GCCGTGATCG TCGCGTTCCT CAGCGAGGAC 
GCGTTCGGCT CCTGGAGCAC CGGGGCGCTG CCGATCAGCG GTCAGGGCGC GGCGTTCGTC 
GCCGCCGGCG TCGCCTTCGT GGTCGACATC GTGCTGAGCG TCGCGATCTC GCTCGTCACC 
CCGCCGAAGC CGGTCGAGGA GCTGCGCGGC CTGGTCTACT CCGAGACCCC GCGCGAGGAC 
CTCGTCGACC CGGACGAGGC GTCCCACCCG TGGTACCAGC GCACGCTCCC GCTCGCCGGG 
GTGGCCCTGG TCCTGGTCAT CATCTTGAAC GTCATCTTCT AG 

 

Protein sequence

MPPDVCASGR PGTGRGGPSG LRHRGERKVF TMASPTVLAT DTIISANAVD YVIVALYFAV 
VLGIGVVARR QISDSVDFFL SGRSLPAWVT GLAFISANLG AVEIMGMSAS GAEFGLPTVH 
YFWIGAIPAM LFLGVVMMPF YYGSKVRSVP EFMRRRFGTG AHLVNAVSFA VAQLLIAGIN 
LFLLGSIVHA LLGWPLWVAL IVAAAIVLSY ITLGGLSAAI YNEVLQFFVI VAGLLPLTLI 
GLHRIGGWGG LTDKITEAAQ AHPDAIPPAD QQLNSWPGLP LTGFDSSLLS VIGIVFGLGF 
VLSFGYWTTN FVEVQRAMAS NSISSARKTP IIGAFPKMFV PFITIIPGMI AAVLVTEIGK 
VKAGQSVPGG ASGDGVAYND ALLYLMRDVL PNGLLGLAIT GLLAAFMAGM AANVSAFNTV 
FSYDLWQQYV VKDRDDHYYL VIGRIATVAA TVVAIFTAGL ASNFSNIMNY LQVLFGFFNA 
PLFATFILGM FWKRMSAAAG WVGLVAGTVS AVIVAFLSED AFGSWSTGAL PISGQGAAFV 
AAGVAFVVDI VLSVAISLVT PPKPVEELRG LVYSETPRED LVDPDEASHP WYQRTLPLAG 
VALVLVIILN VIF