Gene Noca_4311 details

Gene Information

• Locus tag: Noca_4311
• ID: 4596829
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nocardioides sp. JS614
• Kingdom: Bacteria
• Replicon accession: NC_008699
• Strand: +
• Start bp: 4555839
• End bp: 4559111
• Gene Length: 3273 bp
• Protein Length: 1090 aa
• Translation table: 11
• GC content: 73%
• IMG OID: 639778921
• Product: PAS/PAC sensor hybrid histidine kinase
• Protein accession: YP_925495
• Protein GI: 119718530
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG0642] Signal transduction histidine kinase
• TIGRFAM ID: [TIGR00229] PAS domain S-box

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCTCGG ACGGGTACGA CGACGCCGTC GGCGACCCCG GTCCCGACCT GCGCTCGTTC 
GAGCTGCTGC CCGACGGCAT CTGGATCTTC GACGACCAGG GGATCACCTC CTACGCCAAC 
CGGCGGATGG CCGAGATGCT CGGCCGCGAC CAGGCCGAGA TGCCGGGGAC CCGCGTGGTC 
GACTTCTTCG ACGAGGAGGG CGTCCACAAC TTCTGGGAGT GGCTCGGCGA GATGATCCGC 
ACCGGGCACG GCCGGGAGAA CTTCGAGGCG TTCTTCTACC GACCCGACGG CTCCACCGTG 
TGGGGCCTGG TCAGCTCGGC GCCACTCCAC GACGCCGACG GCCGCCGGAC CGGCTGGCTG 
CACCGGATCG CGCCGTACAC CGAGCGCAAG GAGCTGCTCC AGCGACTCCA GGCGAGCGAG 
CACCAGCTCG CCAACGCCCA GCGCATCGCC CGGCTCGGGA GCTGGGAGCG CGACCTGCGC 
ACCGACGAGA TGTCCTGGTC CGACGAGATG TACCGGCTGG TCGGTCTGTC GCCGCAGGAG 
GAGCCGGCCT CGATCGAGCT GATGATCTCC TTCGCCCACC CCGAGGACCG CGACCAGATG 
ATCGCCGCGG CCCGCCACGA TCTCACCCGG GGCGACCAGT ACTCCTTCGA CGGCCGGATC 
GTGCACCGCG ACGGCAGCGT CCGGTGGGGC CGGGTGCTCG GCTACGTCGA GCGGGACGCG 
AGCGGGGCCC CGATCCGCAC CGGCGGCACC GTGCAGGACG TCACCGACCT CAAGAACGCC 
GACCGGGCCG CGGACGAGGC GACCCGCCGC CTGCGGCTGC TGCAGCAGAT GGCGAGCGCC 
GCGAACGTCG CGACCTCGCT GCGCGAGGCG ATGTTGATGG TCGCCCACGG GCTGCCCGGG 
CTGACGAGCT GGTACGCCGT CGGCGCCTGG GTGTGCGGCG ACGACCTGAG TCGGACCGAG 
ATCGACCTCG AGTCCCCGCC CGCGCCTCCG GGCATCACGC TGCACTTCGA CCACGACCTC 
GCGGAGCAGG CCCGCGCGAC GCGGGCGGTC GTCGTCGGGT CGCTGCCGGC GCTGGCGGCC 
ACCCACAGCC TGGTCGCGGT GCCGGTGATC GTCCAGGACC AGGTCCTCGC GGTGGCGGAG 
CTGCTCGCCG ACGAGGTGCC GCCCGACGAG GAGTCCCGTC AGCTCGTCGA GCAGGTCGCC 
ACCCAGCTGG CGGTCGTCGC GGAACGCGAG CGGAGCGCCG CCCAGCTGGC CGAGGCCCGC 
GACGACGCCA TGGAGGCGTC CCGGCTGAAG TCGGAGTTCC TGGCGACCAT GAGCCACGAG 
ATCCGCACCC CGATGAACGG CGTCATCGGG CTGACCGACC TGCTGCTGCT CTCCGAGCTG 
GACGACCACC AGCGCCGGCT GGCCGAGAAC CTCCAGGGCG CGGGGCTGAC CCTCCTCGGG 
ATCATCAACG ACATCTTGGA CCTCTCCAAG ATCGAGTCCG GCAAGCTCGA GCTCGAGTCG 
GCCGACTTCG ACGTGCGCGC GGTCTTCGAC CAGGTCGCCT CCGTGCTCAG CGGGCCGGCC 
CACGCCAAGG GGCTCGAGCT CGTGGTGGCC TGCCACCCCG AGGTGCCCGT CCAGCTGCGC 
GGCGACGCCG TACGGTTCGG CCAGATCCTC ACCAACCTCG GCTCGAACGC GGTCAAGTTC 
ACCGACCAGG GCGAGGTGGT CGTCCAGGCG CGGGTGCTGG CCGAGCACGA GCACGAGCAC 
GAGTCCGAGT CCGAGCCCGG GCCCGGGCCC GGGCACGAGG TGGTGCTGCA GGTCGACGTC 
GCCGACACCG GCGTCGGCAT CGAGCCGCAC TCCCGCGAGC GGCTCTTCGA CGCGTTCACC 
CAGGCCGACC CGTCGACCAC CCGGCGGCAT GGCGGCACCG GGCTCGGCCT GGCGATCTCC 
CGGCAGCTCG CGATCGCCCT CGGTGGCGAG ATCTGGGTCG AGAGCGAGCC CGGTCGGGGC 
AGCACCTTCT CGTTCACGGC CCGCTTCGGG CGCGGCTCCG GTGCCACCGG AGCGAGCCGG 
GAGCACGCGC GGCACCTCGC GGGGCGGCGC GCCCTGGTGA TCGACGACAA CGAGACGAAC 
CGGTTCATCC TCGAGGAGCA GCTCGGCGCG TGGCGGATGC GCCCCGTGGC GGTGGCCTGC 
GCCACCGAGG CGATCGCCAC GCTGCGCGAG GCGGCGCGCT CGGGCGACCC GTACGACGTC 
GCCCTGTTGG ACCTGATGAT GCCGGGAACC GACGGACTGA TGCTGGCCCG CCAGATCCGT 
GCGGACCCGT CCGTGGGCGC CCCCGCGATG CTGCTGCTCA CCTCGGACCA GACGGTGACC 
CGGGAGGAGG TCGAGGGCGC CGGCGTGCAC GCCTCGCTGA GCAAGCCGGT GCGGCACGGC 
GAGCTGCGCG GCGCCCTGCA GGCGCTGCTC GGCGACGCGA CCACCCGGCC GGCGCCGGCC 
TCGCCGGCCG GACCCGGGCT GGGCATCCGG GTCCTGGTCG TGGAGGACAA CCAGGTCAAC 
CAGCTGGTCG CCGCCGGGCT GTTGGAGAAC CTCGGTTGCA CCGTCGACGT CGTCTCCGAC 
GGGGTCGAGG CGGTGCGGCT GCTCACCCGG CCGCACGAGT ACGCCGCGGC CCTGATGGAC 
TGCCGGATGC CGCGACTCGA CGGGTTCGAC GCGACCCGGC AGGTCCGCCG CCACGAGCCG 
GTGGGCCGGC GGGTGCCGAT CATCGCGCTG ACCGCCTCGG CCATGGAGGG CGAGCGCGAG 
CGCTGCCTGG ACGCGGGCAT GGACGACTAC CTCACCAAGC CCGTGGACAC CGCCGAGCTG 
GAGCGGGTGA TCCGTGAGTG GGCGGTCCCG GAGCGCGACC GGCGGACGGC GTCGCCGGCG 
TCCCCCGAGC CGGCCGACGG GCTCCTCAGC GGGATCGCGG ACGGGATCCT CGACGCGGAG 
CGGATCGCGA TGCTCGAGGG CCTGCGCAAG GACGGCATCA GCTTCTTCGA GCGCACCGCC 
GCCTCGTTCC TCGGTCGGGT CGGCAGCCAG CTGCTCGCGA TCCGCGCCGC GGTCGATCGC 
GGCGACGCGA TGGGACTGCT CACCTCGTCG CACCAGCTCA AGGGCAGCGC CCTCAACCTG 
GGGCTGCCGC GGGTGGCCGA GGCCGCCGCG CGCCTCGAGG CGCTGGGCAT CGCCGGCTCC 
ACGACCGGCG CCGAGCCGCT GTTCACGACG GCGACCGCCG AGGTGGAGCT CGCGGTGGCC 
GCGCTCCAGC AGGCGACCAC CCGGGACCGC TGA 

 

Protein sequence

MSSDGYDDAV GDPGPDLRSF ELLPDGIWIF DDQGITSYAN RRMAEMLGRD QAEMPGTRVV 
DFFDEEGVHN FWEWLGEMIR TGHGRENFEA FFYRPDGSTV WGLVSSAPLH DADGRRTGWL 
HRIAPYTERK ELLQRLQASE HQLANAQRIA RLGSWERDLR TDEMSWSDEM YRLVGLSPQE 
EPASIELMIS FAHPEDRDQM IAAARHDLTR GDQYSFDGRI VHRDGSVRWG RVLGYVERDA 
SGAPIRTGGT VQDVTDLKNA DRAADEATRR LRLLQQMASA ANVATSLREA MLMVAHGLPG 
LTSWYAVGAW VCGDDLSRTE IDLESPPAPP GITLHFDHDL AEQARATRAV VVGSLPALAA 
THSLVAVPVI VQDQVLAVAE LLADEVPPDE ESRQLVEQVA TQLAVVAERE RSAAQLAEAR 
DDAMEASRLK SEFLATMSHE IRTPMNGVIG LTDLLLLSEL DDHQRRLAEN LQGAGLTLLG 
IINDILDLSK IESGKLELES ADFDVRAVFD QVASVLSGPA HAKGLELVVA CHPEVPVQLR 
GDAVRFGQIL TNLGSNAVKF TDQGEVVVQA RVLAEHEHEH ESESEPGPGP GHEVVLQVDV 
ADTGVGIEPH SRERLFDAFT QADPSTTRRH GGTGLGLAIS RQLAIALGGE IWVESEPGRG 
STFSFTARFG RGSGATGASR EHARHLAGRR ALVIDDNETN RFILEEQLGA WRMRPVAVAC 
ATEAIATLRE AARSGDPYDV ALLDLMMPGT DGLMLARQIR ADPSVGAPAM LLLTSDQTVT 
REEVEGAGVH ASLSKPVRHG ELRGALQALL GDATTRPAPA SPAGPGLGIR VLVVEDNQVN 
QLVAAGLLEN LGCTVDVVSD GVEAVRLLTR PHEYAAALMD CRMPRLDGFD ATRQVRRHEP 
VGRRVPIIAL TASAMEGERE RCLDAGMDDY LTKPVDTAEL ERVIREWAVP ERDRRTASPA 
SPEPADGLLS GIADGILDAE RIAMLEGLRK DGISFFERTA ASFLGRVGSQ LLAIRAAVDR 
GDAMGLLTSS HQLKGSALNL GLPRVAEAAA RLEALGIAGS TTGAEPLFTT ATAEVELAVA 
ALQQATTRDR