Gene Noca_3905 details

Gene Information

• Locus tag: Noca_3905
• Symbol: rplC
• ID: 4598040
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nocardioides sp. JS614
• Kingdom: Bacteria
• Replicon accession: NC_008699
• Strand: -
• Start bp: 4110597
• End bp: 4111268
• Gene Length: 672 bp
• Protein Length: 223 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 639778511
• Product: 50S ribosomal protein L3
• Protein accession: YP_925090
• Protein GI: 119718125
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0087] Ribosomal protein L3
• TIGRFAM ID: [TIGR03625] 50S ribosomal protein L3, bacterial

Plasmid Coverage information

• Num covering plasmid clones: 24
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACAATCG AGCGCAACAT GAAGGGCCTG CTGGGCACCA AGCTCGGCAT GACCCAGGTC 
TGGGACGAGA ACAACCGCGT CGTCCCCGTC ACCGTGATCG CCGCGGGCAC CAACGTGGTC 
ACCCAGGTGC GGACGCCCGC CACCGACGGC TACAACGCCA TCCAGGTCGG GTACGGCGAG 
ATCGACGGCC GCAAGGTGAC CAAGCCGCAG GCCGGTCACT TCGGCAAGGC CGGCACCACG 
CCGCGCCGCC ACCTGGTCGA GATCCGCACC GCCCTCGCGG CCGACTACAC CGTCGGCCAG 
GAGCTGGCCG TCGACACCTT CGCCGCGGGC GAGGAGATCG ACGTGACCGG CACCAGCAAG 
GGCAAGGGCT TCGCCGGCAC GATGAAGCGC CACGGCTTCG CCGGTGTCTC CGCCTCGCAC 
GGTGCCCACC GCAACCACCG CAAGCCGGGC TCGATCGGCG CGTGCGCCAC GCCGGGCCGC 
GTGTTCAAGG GCGTCCGCAT GGCCGGCCGG ATGGGCACCG ACACGGTGAC CACCCAGAAC 
GTCACCGTGC ACGCCGTGGA CACTGCGAAG GGCCTGATCC TCCTCAAGGG TGCCGTTCCC 
GGCCCCAAGG GTGGCCTCGT GGTCCTCCGC TCGGCCGCCA AGAGCTCTCT CACGTCGGGC 
AAGGAGGTCT GA 

 

Protein sequence

MTIERNMKGL LGTKLGMTQV WDENNRVVPV TVIAAGTNVV TQVRTPATDG YNAIQVGYGE 
IDGRKVTKPQ AGHFGKAGTT PRRHLVEIRT ALAADYTVGQ ELAVDTFAAG EEIDVTGTSK 
GKGFAGTMKR HGFAGVSASH GAHRNHRKPG SIGACATPGR VFKGVRMAGR MGTDTVTTQN 
VTVHAVDTAK GLILLKGAVP GPKGGLVVLR SAAKSSLTSG KEV