Gene Noca_3824 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNoca_3824 
Symbol 
ID4595889 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNocardioides sp. JS614 
KingdomBacteria 
Replicon accessionNC_008699 
Strand
Start bp4045353 
End bp4047383 
Gene Length2031 bp 
Protein Length676 aa 
Translation table11 
GC content75% 
IMG OID639778432 
Producthelicase c2 
Protein accessionYP_925011 
Protein GI119718046 
COG category[K] Transcription
[L] Replication, recombination and repair 
COG ID[COG1199] Rad3-related DNA helicases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00296278 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCCCGAAG CCCCACCCGC CACGTCCCCC GCGACGGCCG TGACCCCAGT CGTCACGGAG 
CTGCTCGGCA CCGCGGTGGC GGCGCTGGGC GGCCAGGAGC GCGCCGGGCA GGTGCGGATG
GCCGAGGCCG TCGCCGAGGC GATGGACAAG GGCCGGCACC TGCTGGTCCA GGCCGGCACC
GGCACCGGCA AGTCCCTGGC CTACCTGGTG CCGAGCCTGC TGCACGGTGA CCGCGTGGTG
GTGGCGACCG CGACGCTCGC GCTGCAGCAC CAGCTCGTCG AGCGCGACCT GCCGCGGCTG
GTCGAGGCGG TCGAGGGCGC TCCCGCGGCC GACGGTTCCG GCAGCCTCGA CACCAGCTAC
GCCGTGCTCA AGGGCCGCTC CAACTACGCC TGCCTGCACC GCATCCGCGA GGGCGTCCCC
GACGACCAGG GTGCCCTGGT CGAGCTGCCC GAGGGTTCGC TGGGCAAGAA GGTGCTCGAG
CTGCGGGCCT GGGCCGAGGA GGAGGCCGAG CAGGGTGGCA GCGGCGAGCG CGACAACGCG
CCCCGGCACA CCGACCGGGA GTGGCGCCAG GTCAGCGTCA ACCACCGTGA GTGCCTGGGC
GCGGCCAAGT GCCCGTTCGG CCAGGAGTGC TTCGCCGAGC TGGCCAAGGA GAAGGCACAC
CGCTCCCACC TGGTGGTCAC CAACCACTCG CTGCTCGCGA TCGACGCGAT CGAGGGCGTG
CCGATGATCC CCGAGTACGA CGTCGTGGTG ATCGACGAGG CGCACGAGCT CACCACCCGG
GTGACCCAGG CGGCGACCGA CGAGCTCTGG GCCGCCGAGG TCGAGCGCGC CGCGCGCCGC
AGCCAGCGGC ACGTGGACGG GAGCGCGGCC GACGACCTCG CCGACGCGGC CGACGCGCTG
CGCGACGCGA TCGCCGAGGC CCGGCCGGGC CGCTTCGAGC GGGTCCCCGA GGAGCTCTCG
GACGCCCTGG TGCTGGTCCG CGACGCGGCG CGGGCCTGCC TCTCGGCGTA CCCCAAGGCG
GACTCCTCGG AGGAGCCCGA CGCGGGCCGT CAGCAGGCCA AGGGCGCCGT GCAGGAGGTG
TTCGCGACCG CCGAGCGGAT GGCCGCGGCC TCCGAGAGCG ACGTGCTGTG GCTCAGCGAG
GGCACCGAGC GGATGCCGCC GCGGCTGTGT GTGGCGCCGC TGCAGGTGTG GGGCCCGATG
CGCGACAAGC TGCTGGCCGA CAAGACGGTG GTGTTCACCT CGGCCACCCT GATGCTCGGC
GGCGACTTCT CCTCGGTCGC CACCAGCGTC GGGCTGAAGC CCGCCGAGCG GATCGTCGAC
GGCTCCCCGG TCGCCGAGAC GCCGGTGTCC GAGCAGGCCC AGCCGTGGCG CGGCCTCGAC
GTCGGCAGCC CGTTCGACTA CGGCCGGCAG GCGATCCTGT ACGTCGCCCG GCACCTGCCG
CCCCCGGGCC GCGACGGGCT CGGGAAGGCC CAGCTCGACG AGATCGTCGA GCTGGTCGAC
GCGGCGCACG GCCGCACGCT CGGGCTGTTC TCGAGCCGCC GCGCGGCCGA GGCAGCGGCG
GAGACCGTCC GCGGGCGGCT GCCGCACCTC ACCACCCTGG CCCAGGGCGA CGCGCAGCTG
CCCGAGCTCG CCGCGCAGTT CGTCGGCGAC CCGCACACCT GCCTGTTCGG CACGCTCAGC
CTGTGGCAGG GCCTCGACGT CCCCGGCGAC ACCTGCCAGC TGGTGCTCAT CGACCGGATC
CCGTTCCCGC GACCGGACGA CCCGCTGCTC AGTGCCCGCC AGAAGGCCGC CGACCAGGCC
GGCGGCAACG GCTTCATGCA GGTGGCGGCC ACCCATGCCG CACTGCTGCT CGCCCAGGGC
GCGGGCCGGC TGATCCGCAC CCACACCGAC CGCGGCGTCG TCGCCGTCCT CGACCCACGG
CTCGCGACCG CCCGGTACGG CGGGTTCCTC AAGGCGAGCC TGCCGCCGAT GTGGACGACC
ACCGATCCGG CGGTCGCCCG CCAGGCGCTG ACCCGGCTCG CGGCTACCTG A
 
Protein sequence
MPEAPPATSP ATAVTPVVTE LLGTAVAALG GQERAGQVRM AEAVAEAMDK GRHLLVQAGT 
GTGKSLAYLV PSLLHGDRVV VATATLALQH QLVERDLPRL VEAVEGAPAA DGSGSLDTSY
AVLKGRSNYA CLHRIREGVP DDQGALVELP EGSLGKKVLE LRAWAEEEAE QGGSGERDNA
PRHTDREWRQ VSVNHRECLG AAKCPFGQEC FAELAKEKAH RSHLVVTNHS LLAIDAIEGV
PMIPEYDVVV IDEAHELTTR VTQAATDELW AAEVERAARR SQRHVDGSAA DDLADAADAL
RDAIAEARPG RFERVPEELS DALVLVRDAA RACLSAYPKA DSSEEPDAGR QQAKGAVQEV
FATAERMAAA SESDVLWLSE GTERMPPRLC VAPLQVWGPM RDKLLADKTV VFTSATLMLG
GDFSSVATSV GLKPAERIVD GSPVAETPVS EQAQPWRGLD VGSPFDYGRQ AILYVARHLP
PPGRDGLGKA QLDEIVELVD AAHGRTLGLF SSRRAAEAAA ETVRGRLPHL TTLAQGDAQL
PELAAQFVGD PHTCLFGTLS LWQGLDVPGD TCQLVLIDRI PFPRPDDPLL SARQKAADQA
GGNGFMQVAA THAALLLAQG AGRLIRTHTD RGVVAVLDPR LATARYGGFL KASLPPMWTT
TDPAVARQAL TRLAAT