Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Noca_3824 |
Symbol | |
ID | 4595889 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nocardioides sp. JS614 |
Kingdom | Bacteria |
Replicon accession | NC_008699 |
Strand | - |
Start bp | 4045353 |
End bp | 4047383 |
Gene Length | 2031 bp |
Protein Length | 676 aa |
Translation table | 11 |
GC content | 75% |
IMG OID | 639778432 |
Product | helicase c2 |
Protein accession | YP_925011 |
Protein GI | 119718046 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1199] Rad3-related DNA helicases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00296278 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCCCGAAG CCCCACCCGC CACGTCCCCC GCGACGGCCG TGACCCCAGT CGTCACGGAG CTGCTCGGCA CCGCGGTGGC GGCGCTGGGC GGCCAGGAGC GCGCCGGGCA GGTGCGGATG GCCGAGGCCG TCGCCGAGGC GATGGACAAG GGCCGGCACC TGCTGGTCCA GGCCGGCACC GGCACCGGCA AGTCCCTGGC CTACCTGGTG CCGAGCCTGC TGCACGGTGA CCGCGTGGTG GTGGCGACCG CGACGCTCGC GCTGCAGCAC CAGCTCGTCG AGCGCGACCT GCCGCGGCTG GTCGAGGCGG TCGAGGGCGC TCCCGCGGCC GACGGTTCCG GCAGCCTCGA CACCAGCTAC GCCGTGCTCA AGGGCCGCTC CAACTACGCC TGCCTGCACC GCATCCGCGA GGGCGTCCCC GACGACCAGG GTGCCCTGGT CGAGCTGCCC GAGGGTTCGC TGGGCAAGAA GGTGCTCGAG CTGCGGGCCT GGGCCGAGGA GGAGGCCGAG CAGGGTGGCA GCGGCGAGCG CGACAACGCG CCCCGGCACA CCGACCGGGA GTGGCGCCAG GTCAGCGTCA ACCACCGTGA GTGCCTGGGC GCGGCCAAGT GCCCGTTCGG CCAGGAGTGC TTCGCCGAGC TGGCCAAGGA GAAGGCACAC CGCTCCCACC TGGTGGTCAC CAACCACTCG CTGCTCGCGA TCGACGCGAT CGAGGGCGTG CCGATGATCC CCGAGTACGA CGTCGTGGTG ATCGACGAGG CGCACGAGCT CACCACCCGG GTGACCCAGG CGGCGACCGA CGAGCTCTGG GCCGCCGAGG TCGAGCGCGC CGCGCGCCGC AGCCAGCGGC ACGTGGACGG GAGCGCGGCC GACGACCTCG CCGACGCGGC CGACGCGCTG CGCGACGCGA TCGCCGAGGC CCGGCCGGGC CGCTTCGAGC GGGTCCCCGA GGAGCTCTCG GACGCCCTGG TGCTGGTCCG CGACGCGGCG CGGGCCTGCC TCTCGGCGTA CCCCAAGGCG GACTCCTCGG AGGAGCCCGA CGCGGGCCGT CAGCAGGCCA AGGGCGCCGT GCAGGAGGTG TTCGCGACCG CCGAGCGGAT GGCCGCGGCC TCCGAGAGCG ACGTGCTGTG GCTCAGCGAG GGCACCGAGC GGATGCCGCC GCGGCTGTGT GTGGCGCCGC TGCAGGTGTG GGGCCCGATG CGCGACAAGC TGCTGGCCGA CAAGACGGTG GTGTTCACCT CGGCCACCCT GATGCTCGGC GGCGACTTCT CCTCGGTCGC CACCAGCGTC GGGCTGAAGC CCGCCGAGCG GATCGTCGAC GGCTCCCCGG TCGCCGAGAC GCCGGTGTCC GAGCAGGCCC AGCCGTGGCG CGGCCTCGAC GTCGGCAGCC CGTTCGACTA CGGCCGGCAG GCGATCCTGT ACGTCGCCCG GCACCTGCCG CCCCCGGGCC GCGACGGGCT CGGGAAGGCC CAGCTCGACG AGATCGTCGA GCTGGTCGAC GCGGCGCACG GCCGCACGCT CGGGCTGTTC TCGAGCCGCC GCGCGGCCGA GGCAGCGGCG GAGACCGTCC GCGGGCGGCT GCCGCACCTC ACCACCCTGG CCCAGGGCGA CGCGCAGCTG CCCGAGCTCG CCGCGCAGTT CGTCGGCGAC CCGCACACCT GCCTGTTCGG CACGCTCAGC CTGTGGCAGG GCCTCGACGT CCCCGGCGAC ACCTGCCAGC TGGTGCTCAT CGACCGGATC CCGTTCCCGC GACCGGACGA CCCGCTGCTC AGTGCCCGCC AGAAGGCCGC CGACCAGGCC GGCGGCAACG GCTTCATGCA GGTGGCGGCC ACCCATGCCG CACTGCTGCT CGCCCAGGGC GCGGGCCGGC TGATCCGCAC CCACACCGAC CGCGGCGTCG TCGCCGTCCT CGACCCACGG CTCGCGACCG CCCGGTACGG CGGGTTCCTC AAGGCGAGCC TGCCGCCGAT GTGGACGACC ACCGATCCGG CGGTCGCCCG CCAGGCGCTG ACCCGGCTCG CGGCTACCTG A
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Protein sequence | MPEAPPATSP ATAVTPVVTE LLGTAVAALG GQERAGQVRM AEAVAEAMDK GRHLLVQAGT GTGKSLAYLV PSLLHGDRVV VATATLALQH QLVERDLPRL VEAVEGAPAA DGSGSLDTSY AVLKGRSNYA CLHRIREGVP DDQGALVELP EGSLGKKVLE LRAWAEEEAE QGGSGERDNA PRHTDREWRQ VSVNHRECLG AAKCPFGQEC FAELAKEKAH RSHLVVTNHS LLAIDAIEGV PMIPEYDVVV IDEAHELTTR VTQAATDELW AAEVERAARR SQRHVDGSAA DDLADAADAL RDAIAEARPG RFERVPEELS DALVLVRDAA RACLSAYPKA DSSEEPDAGR QQAKGAVQEV FATAERMAAA SESDVLWLSE GTERMPPRLC VAPLQVWGPM RDKLLADKTV VFTSATLMLG GDFSSVATSV GLKPAERIVD GSPVAETPVS EQAQPWRGLD VGSPFDYGRQ AILYVARHLP PPGRDGLGKA QLDEIVELVD AAHGRTLGLF SSRRAAEAAA ETVRGRLPHL TTLAQGDAQL PELAAQFVGD PHTCLFGTLS LWQGLDVPGD TCQLVLIDRI PFPRPDDPLL SARQKAADQA GGNGFMQVAA THAALLLAQG AGRLIRTHTD RGVVAVLDPR LATARYGGFL KASLPPMWTT TDPAVARQAL TRLAAT
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