Gene Noca_3266 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNoca_3266 
Symbol 
ID4599128 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNocardioides sp. JS614 
KingdomBacteria 
Replicon accessionNC_008699 
Strand
Start bp3467498 
End bp3469069 
Gene Length1572 bp 
Protein Length523 aa 
Translation table11 
GC content70% 
IMG OID639777872 
Productsignal recognition particle subunit FFH/SRP54 (srp54) 
Protein accessionYP_924455 
Protein GI119717490 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0541] Signal recognition particle GTPase 
TIGRFAM ID[TIGR00959] signal recognition particle protein 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0903561 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGTTCGCCA CACTCTCCGA CCGGCTCGCC GACACCTTCA AGAACCTCCG GGGGAAGGGT 
CGGCTCTCCG AGGCCGACAT CGACGCCACC GCGCGCGAGA TCCGGATCGC CCTGCTCGAG
GCCGACGTCG CGCTGCCGGT GGTCAAGGAG TTCGTCGGCG CCGTCAAGGA GCGCGCTCGC
GGCGAGGAGG TCAGCCAGGC GCTGAACCCG GCCCAGCAGG TCGTCAAGAT CGTCAACGAG
GAGCTCGTGG CGATCCTCGG CGGGGAGGCT CGGCGGCTGC GCTACGCCAA GACCGGCCCG
ACGGTCATCA TGCTCGCCGG CCTCCAGGGC GCCGGCAAGA CGACGCTGGC GGCCAAGCTC
GCGCTCTGGC TCAAGGAGCA GGGCAAGAGC CCGCTGCTGG TCGCCGCCGA CCTCCAGCGC
CCGAACGCGG TCAACCAGCT CCAGGTCAAC GGCGAACGCG CCGGCGTACC CGTCTTCGCG
CCCGAGCCCG GGAACGGCGT CGGGGACCCG GTCGGCGTGG CCCGGGCCTC GATCGAGGAG
GCCAAGCGCA CCCTCCACGA CGTGGTCATC GTCGACACCG CCGGCCGCCT CGGCGTCGAC
GCCGAGATGA TGCAACAGGC CGCGGACATC CGCGACGCGG TCCAGCCCGA CGAGGTGCTC
TTCGTCGTCG ACGCGATGAT CGGCCAGGAC GCCGTCGTGA CGGCGCAGGC GTTCCTCGAC
GGCGTCGGGT ACGACGGCGT GGTGCTCACC AAGCTCGACG GTGACGCCCG CGGTGGCGCC
GCGCTGTCGA TCGCCTCGAT CACCGGCAAG CCGGTGATGT TCGCGTCGGC CGGCGAGAAG
CTCACCGACT TCGACCTCTT CCACCCCGAC CGGATGGCCT CGCGGATCCT CGACATGGGT
GACGTGATGA CCCTGATCGA GCAGGCCGAG AAGGCCTTCG ACCAGGAGCA GGCCGCGAAG
GCCGCGGCCA AGCTCACCGG GCAGGGCGGC GAGTTCACCC TCGACGACTT CCTCGAGCAG
ATGCAGCAGG TCCGCAAGCT CGGCTCGATG TCGAAGATCA TGGGGATGCT TCCCGGGATG
GGGCAGTTCC GCGAGCAGCT GGAGAACTTC GATGAGCGCG AGATCGACCG GATCCAGGCG
ATCATCCAGT CGATGACTCC GGCCGAGCGG GCGAACCCGA AGATCATCGA CGGCTCCCGC
CGGGCCCGCA TCGCGCGAGG CTCGGGACGC CAGGTCTCCG ACGTCAACCA GCTCGTGGAC
CGGTTCTTCG AGGCCCGCAA GATGATGATG TCGCTGGCCA AGGGCGGCGG GATGCCGGGG
ATGCCCGGGA TGGCCGGGAT GCCGGGGATG GGCAAGCGAG CCAAGGCCAA GCAGGCCCCG
AAGAAGGGCA AGGGGGGCAA GCGGGTCTCC GGCAACCCTG CCAAGGCAGC CCAGCAGGCC
GCGGCCGCGA AGGAGAAGGC CCAGGGCGCG CCCGCCAACC CGTTCGGGAC CCCCGACGGG
GAGGAGCTGG ACTATGAGAA GGCGGCGGCC GCCCTCAACC TGCCCAAGGA CTTCTCCAAG
TTCCTCAAAT AG
 
Protein sequence
MFATLSDRLA DTFKNLRGKG RLSEADIDAT AREIRIALLE ADVALPVVKE FVGAVKERAR 
GEEVSQALNP AQQVVKIVNE ELVAILGGEA RRLRYAKTGP TVIMLAGLQG AGKTTLAAKL
ALWLKEQGKS PLLVAADLQR PNAVNQLQVN GERAGVPVFA PEPGNGVGDP VGVARASIEE
AKRTLHDVVI VDTAGRLGVD AEMMQQAADI RDAVQPDEVL FVVDAMIGQD AVVTAQAFLD
GVGYDGVVLT KLDGDARGGA ALSIASITGK PVMFASAGEK LTDFDLFHPD RMASRILDMG
DVMTLIEQAE KAFDQEQAAK AAAKLTGQGG EFTLDDFLEQ MQQVRKLGSM SKIMGMLPGM
GQFREQLENF DEREIDRIQA IIQSMTPAER ANPKIIDGSR RARIARGSGR QVSDVNQLVD
RFFEARKMMM SLAKGGGMPG MPGMAGMPGM GKRAKAKQAP KKGKGGKRVS GNPAKAAQQA
AAAKEKAQGA PANPFGTPDG EELDYEKAAA ALNLPKDFSK FLK