Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Noca_2441 |
Symbol | def |
ID | 4598277 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nocardioides sp. JS614 |
Kingdom | Bacteria |
Replicon accession | NC_008699 |
Strand | + |
Start bp | 2603597 |
End bp | 2604142 |
Gene Length | 546 bp |
Protein Length | 181 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 639777044 |
Product | peptide deformylase |
Protein accession | YP_923633 |
Protein GI | 119716668 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
TIGRFAM ID | [TIGR00079] peptide deformylase |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.0409247 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGCCATCC AGCCGATCCG TCTCTTCGGG GACCCCGTCC TGCGCAAGCC CGCCATCGAG GTCGTCGACT TCGACAAGGA GCTGCGCCGG CTCGTCGCGG ACCTCACCGA CACCATGATG GACGCCCCCG GCGCGGGGTT GGCCGCGCCG CAGATCGGCG TGGGACTCCG GGTCTTCACC TGGTACGTCG ACGGCGAGCC CGGGCACCTG GTCAACCCGC AGCTGGACCT GTCGGACGAG CTGCAGGACG GTCCCGAGGG CTGTCTCTCG ATCCCGGGCC TCAGCGTGGA CTGCCAGCGC GCGATGGCTG CTGTGGCCCG CGGCTTCAAC ATGTACGGCG ACCCGGTGAC CATCGAGGGC ACCGAGCTGC TGGCCCGCGC GCTCCAGCAC GAGACCGACC ACCTCGACGG GGTGCTGTTC ATCGACCGCC TGGACACCGA GGCCCGCAAG GCCGCGATGA AGGCGATCCG CGAGTCGGAG TGGTTCGGCC TCGACGCCCC CCAGGTGAAG GTCTCTCCGC ACGCCACGCA CGGGCTCGGC TTCTGA
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Protein sequence | MAIQPIRLFG DPVLRKPAIE VVDFDKELRR LVADLTDTMM DAPGAGLAAP QIGVGLRVFT WYVDGEPGHL VNPQLDLSDE LQDGPEGCLS IPGLSVDCQR AMAAVARGFN MYGDPVTIEG TELLARALQH ETDHLDGVLF IDRLDTEARK AAMKAIRESE WFGLDAPQVK VSPHATHGLG F
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