Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Noca_1393 |
Symbol | |
ID | 4595866 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nocardioides sp. JS614 |
Kingdom | Bacteria |
Replicon accession | NC_008699 |
Strand | + |
Start bp | 1470960 |
End bp | 1471742 |
Gene Length | 783 bp |
Protein Length | 260 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 639775991 |
Product | sigma-70 region 4 domain-containing protein |
Protein accession | YP_922594 |
Protein GI | 119715629 |
COG category | [K] Transcription |
COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family [TIGR02980] RNA polymerase sigma-70 factor, sigma-B/F/G subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0296356 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAGCACC GACGAGAGGC CACCGCCCGG CTCTTCGACG AGTTGGAGAA CGCGTCCGAC GACGAGCGCC GCCGTATTCG CGACGAGATC GTCCGGCTCA ACATGGGCGT CGCCAGCGAC TGCGCCCGTC GCTACCGGCA GCGCGGCATC GCCACCGAGG ACCTGGACCA GGTGGCCTAC CTGGGGTTGG TCAAGGCGGT CCGCGGCTTC GAGCCGGGCC GCGGCCACGA CTTCTTGTCC TTCGCGGTGC CGACGATCCG TGGCGAGGTG CGCCGGCACT TCCGCGATCT CGGCTGGGCG CTGCGGCCGC CCCGATCGAT CCAGGAGCTC CAGTCGCGCA TTCACGCTGC CGAGGGCGAC CTGTCCCAGG AGCTGGGTCG CTCGCCGCGG CCGAGCGACC TCGCCCGCCA CCTCGGGGTC GACCTGGAGC AGGTGCTCGA CGCGCTGGGC GCGACCGGCT GCTTCGCCCC GGCCTCACTC GACGTGGTCG GCGCCGACGG TGACGACTCC CTGGGCGACC GGCTCGGCAC GGCGGATCCG GCGTTCGACC AGGCCGAGGC ACGGATCACG CTGGCGGCGG TGCTGCGCGG ACTGACGCCG AGGGAGCGTC GGATCCTCGA GCTGCGGTTC TTCGGCAACC ACACCCAGGC CGAGATCGGC GCCGACATCG GCGTCACCCA GATGCAGGTC TCCCGGCTGC TGAACCGGAT CCTGGCCCGC CTGCGGGAGC GGATGCTCGC CGCCTCCGAC GAGGCGCCGG TGTCCTCGGG CCCGGCGGCT TAG
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Protein sequence | MEHRREATAR LFDELENASD DERRRIRDEI VRLNMGVASD CARRYRQRGI ATEDLDQVAY LGLVKAVRGF EPGRGHDFLS FAVPTIRGEV RRHFRDLGWA LRPPRSIQEL QSRIHAAEGD LSQELGRSPR PSDLARHLGV DLEQVLDALG ATGCFAPASL DVVGADGDDS LGDRLGTADP AFDQAEARIT LAAVLRGLTP RERRILELRF FGNHTQAEIG ADIGVTQMQV SRLLNRILAR LRERMLAASD EAPVSSGPAA
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