| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_1161 |
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| Symbol | |
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| ID | 4599336 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nocardioides sp. JS614 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008699 |
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| Strand | + |
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| Start bp | 1233072 |
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| End bp | 1234814 |
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| Gene Length | 1743 bp |
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| Protein Length | 580 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 639775756 |
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| Product | VanW family protein |
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| Protein accession | YP_922363 |
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| Protein GI | 119715398 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG2720] Uncharacterized vancomycin resistance protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.318688 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAATCAGC AGCCGACCGT GCCCGCCCGG GAGAAGGAGG GCGGCAAGGT CGTCCTGCTG
ATGCTCGCCG GGCTCGTCCT GCTGGCAGGA GCGGCGTACG GCGCGCTGTA TCTCGCCGCC
GGCGACAAGG TGCCGCGGGG CACCACGGTG GCCGGTGTCG ACATCGGCGG CCGGACCCCG
GCCGACGCCG AGGAGGTGCT CCGCACCGGG CTCGCCGACC GGGTGGACCG GCCGATCACG
GTGGCCGCCG AGGGGGCGCG GAGCACCCTC GACCCGGGCG AGGCGGGCCT CACCGTCGAC
TACGCCGCAT CGGTGGCCGA GGCCGGCGGC GGCCGCAGCT GGAGCCCCGG GCGGCTGTGG
GACTACTGGA CCGGCGGCGA CGACCTCGAC CCGGTCCTCG ACGTGGACGA CGCGGCCTTC
GACGCCGCGC TCGACAAGCT CGGGGAGGAC CTCGGCACCC CGCCGGTCGA GGGCGACGTG
AAGTTCCGCG ACGGCAAGGT CGTCGTCACC GACCCGGCCA CCGGCGAGGA GATCCACCCC
GAGGCGGCCC GACTCGCGAT CACCACGGCG TACATCGCCG AGGACGCCAC CGACGTCGAG
CTCGAGCTGC GCCCGGCCGA CCCCGAGGTG GACGCCGCCG ACCTCCAGGA GGCGCTGGAG
GCGTTCGCCA ACCCGGCGAT GTCCGGCCCG GTGACGCTGG TCTTCGGCGA CTCGCCGGTG
CGGCTCGACC CGGCCGACTT CGGCAAGGTC CTCGGGATGG GCGCCGAGGA CGGCGAGCTG
GTGCCGGACC TGCGGGAGAA GAAGCTCGTC AAGCTGGTCG ACCGCGGGAT CAGCCAGGAC
GGTGCGCCGG TTGACGCGAC CGTCGCCCTG GTGGACGGCA AGCCCAAGGT GATCCCCGCC
AAGCCCGGCG TCACTTACAA GCCCTCCGAC GTCAGCGACG CCTTCCTCGA GCTGGTCGCC
CGCGAGGGCG ACCGCGAGAT GAAGGTCCCC TCGACGGTCG CCGAGCCGGA CTTCACCACC
AAGGATGCCC GGGCGCTGAA GATCCGCGAG CAGGTCTCCA CGTTCACGAC GTACTACCCC
TACGCGGAGT ACCGCAACAT CAACATCGGA CGCGCCGCCG AGCTGATCGA CGGCACCGTC
CTGAAGCCCG GCGACGAGTT CTCGCTCAAC GGCATCGTCG GCGAGCGCAC CCGCGAGAAC
GGCTTCACCG AGGGCTTCAT CATCAGCGAC GGCATCTTCA AGGAGGACCT CGGCGGCGGC
GTCTCGCAGA TGGCGACCAC GACCTTCAAC GCGATGTTCT TCGCTGGCCT GAAGGACATC
GAGCACAAGC CGCACTCGTT CTACATCGAC CGCTACCCCG TGGGCCGCGA GGCGACGGTG
GCCTGGGGCG CGGTCGACCT GCGGTTCGAG AACGACACGC CGTACGGCGT GCTCGTGCAC
GCGCACGTCA CGCCGGCGAC GTCGTCGTCC CAGGGCGTGG TGACCGTGTC GATGTACTCC
ACGAAGTACT GGGACATCTC TACCACCACC TCGGACCGCT ACAACTACCG CCAGCCGGCG
ACCCGCACCC TGACCACCCC GGACTGCTAC CCGAACACCG GGTACGCCGG CTTCGACGTG
GACGTCACGC GCACCTTCCG CCGCCACGGC GAGGACGCCG TCGACCACAC CGAGAAGTTC
CACACCGCCT ACACGCCCTC CGACACGGTG ATCTGCAAGA AGCCCAAGCA GCGAGGTGAC
TGA
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| Protein sequence | MNQQPTVPAR EKEGGKVVLL MLAGLVLLAG AAYGALYLAA GDKVPRGTTV AGVDIGGRTP
ADAEEVLRTG LADRVDRPIT VAAEGARSTL DPGEAGLTVD YAASVAEAGG GRSWSPGRLW
DYWTGGDDLD PVLDVDDAAF DAALDKLGED LGTPPVEGDV KFRDGKVVVT DPATGEEIHP
EAARLAITTA YIAEDATDVE LELRPADPEV DAADLQEALE AFANPAMSGP VTLVFGDSPV
RLDPADFGKV LGMGAEDGEL VPDLREKKLV KLVDRGISQD GAPVDATVAL VDGKPKVIPA
KPGVTYKPSD VSDAFLELVA REGDREMKVP STVAEPDFTT KDARALKIRE QVSTFTTYYP
YAEYRNINIG RAAELIDGTV LKPGDEFSLN GIVGERTREN GFTEGFIISD GIFKEDLGGG
VSQMATTTFN AMFFAGLKDI EHKPHSFYID RYPVGREATV AWGAVDLRFE NDTPYGVLVH
AHVTPATSSS QGVVTVSMYS TKYWDISTTT SDRYNYRQPA TRTLTTPDCY PNTGYAGFDV
DVTRTFRRHG EDAVDHTEKF HTAYTPSDTV ICKKPKQRGD
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