Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Noca_1139 |
Symbol | |
ID | 4599392 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nocardioides sp. JS614 |
Kingdom | Bacteria |
Replicon accession | NC_008699 |
Strand | - |
Start bp | 1208957 |
End bp | 1211608 |
Gene Length | 2652 bp |
Protein Length | 883 aa |
Translation table | 11 |
GC content | 76% |
IMG OID | 639775735 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_922342 |
Protein GI | 119715377 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00209756 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGTTGAGCG GAGGAGTGCC ATCGGCGCTC TGCCCGCCCA CGGTCCTGGT CGTCACCGAC GGGTCGAGGG AGGGCAGCAC GGTCGCGGCG AGCGCGAACG CCGTCGCCCG CGACGTCCTC GTCACCCACG CGCTCACCCT CCCCTCCGCG CTCGTCGCCC TCGACTCCTC CACCTATGAC TGCGTGCTGG TCGACGTCGG CACCCCCGAC GTCGCCGCCG CCGACCTCGC GGACACCCTG CGCGGCCACG CCGGTGCGGC CGCCCTGGTG CTGGTCGTCG ACGACGACGC CACGATCCCG GCGGCCCTCG AGGATCTCGC CGACCTGGTG CTCCAGCAGG CCGACCTGAC CGGCGACTGG CTGCGGCGGG TCCGGCGGGC CGTCGAGCAC GCCCGAGTCC GGGCCGCCCT GCAGGAGTCC GAGGCTGCGG TCGCGCGGCT CACCGGCATC GTCGAGTCGG TCGCCGACGC GGTGTTCACC ACCACGATCG ACGGGCTGGT CACCTCGTGG AACGACGGGG CCGAGGCCCT GTACGGCTTC CCCGCCGCCG AGATGCTCGG CGCCCCGATC GCCACGCTCC ACCCGCCGGG GTCCGACGAG CCGCGGCGGA TCCTCACCAT GGTCCGCGCC GGGAAGGCGA TCCAGGGACT GGACACGCTG CGACGCACCC GTGACGGCCG GATGGCGCAG GTCTCGATCA GCGTCACCGG GCTGCGCGAC CACCGCGACG GCCTCAGCGG CATGGTCGTG GTCGCCCGCG ACATCAGCGA CCGCCTCGAG CTCGAGGCCG AGCTGGTCCG CCAGACCATG CACGACGCGC TGACCGGGCT CCCCAACCGC TCCTTCCTCA CCTACCGGCT CACCCAGGCG ATCGCCGAGG GCCGGCGCCG TGGCCGCCCG GTCGCCGCCC TGCTGCTGGA CCTCGACCAG TTCCGCGCCG CGAACGACGT GCACGGCCAC CTCACCGGCG ACCGGGTGCT CACCGAGGTC GCGGACCGGC TGCGGGTCCT GGCCCGCCCC ACCGACGTGG TCGCGCGGAT CGGCGGCGAC GAGTTCGTCC TGGTCTGCCC CGACACCGAC GTGGCGGCGG CCGGGCGGCT CGCCGAGCAG GTCATCGAGG CCGTCGGCGC ACCGATCCAG GTCGAGCACC GGGCGCTGCG GGTCGGCGCC AGCGTCGGGA TCGCGGTCGC CCCTCCCCTG GACTGCGACG CGGAGGTCCT GCTCAAGCAC GCGGACGCCG CGATGTACGA GGCCAAGAAG CGCGGCCGCG CCCGCAGCCA GGTCTTCGAC CCGGCACTGG CCCGCCTGGC CGGCGAGCAG CGGCTGCTGG CCGGCGACCT GCGGGCCGCG CTCGATGACG ACCGGCTCGA GGTGCACTTC CAGCCCGTGG TCGACCTGAC CAGCGACCGG ATGGTCGGCT TCGAGGCGCT GACCAGGTGG CACCACCCGA CCCGCGGCGC CGTCCCGCCC GGGACGTTCG TGCCGATCGC CGAGGCCCAC GGGTTCGTGG CCGACCTCGA CCATTGGGTC CTCGACCGCG CCTGCCGGCA GACCGCCGCC GCGCTCGCCA CCGGCGAGCT CACCCCCGGC GTGCACGTGG CGGTCAACCT CTCCGCCCGC TCCCTGGACG AGCCGAACCT GGTGGACACA GTCGGCGAGG TCCTCGACCG CTCCGGGCTG CCGCCGGCAG CCCTGGTCCT CGAGGCCACC GAGACCGCCC TGCCCCGCGA CCCCGAGGCC GCCCGCGCGT CCCTCGCCGG GCTCCGCGAC CTGGGCGTCG GGATCTCCCT CGACGACTTC GGGACCGGCT ACTCCTCGCT CAGCTTCCTG CGCGAGCTGC CCGTGACCGG CGTGAAGATC GACCGGTCGT TCATCCGCAA CGCGGTCGAG CGGCCCGAGG ACCTGGCGAT CACCGAGGCG ATCGTGCGGC TCGCCAAGGG CCTGGGCCTC GAGACCATCG CCGAGGGCAT CGAGACCGCC GAGCAGCGCG AGCTGCTGCG CGACCTCGGC TGCGCCCGCG CCCAGGGGTT CTGGTGGAGC CCGGCCGTGC CGATGGCCGA GCTGCCGGGC GGCCGCGCCG CCGCCCGGGT GGCGCGGATC CTGCAGCCCG CCGGCACCGC CGACCCCGCC CCGCCGTTGC GCAGCACCCG GGTGTCGCGC CGGATCATCG AGCCGTCTGC GCCCACCACC GTGGTCACCA CCTGCTGCCT GCGTGGCGGC ATCGAGTCCG GGCAGGCCTG GCTGGTCGTC ACCACCGCGG CCCGCCGCGA GGCGTTCGCC AGCTCGCTCG GCCCGCTGCA CGCCACCGCA CTGGCCCGGG GACAGCTGGT CGAGCTGGAC GCCTACGAGA CGCTGCGCCG GGTCACCTCG GCCGACGGCC GCCTCGACCA GGCCCGCTAC GACCACGTCG TCGGCTCCGC ACTGCGCCGC CTCGCCGCGG CCGGCGATCA GGTGGGCGTG CACGCCGAGC TCGGCCACGT GACCCGGCCG CTGCTCAGCC AGGACGTCTC CACCGACCTG CGGGCCCGGC TGCACGAGGC CGCCGCCCTG ACCCTGGAGT ACGGCGACCA CCCGGCCGAC TGCGCCGCCC ACGGCCCGGC CGTCGCCCCC GTCGTGGAGC TGTTCGCCGC GGACGGTTCA ACCGCCGGCT GA
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Protein sequence | MLSGGVPSAL CPPTVLVVTD GSREGSTVAA SANAVARDVL VTHALTLPSA LVALDSSTYD CVLVDVGTPD VAAADLADTL RGHAGAAALV LVVDDDATIP AALEDLADLV LQQADLTGDW LRRVRRAVEH ARVRAALQES EAAVARLTGI VESVADAVFT TTIDGLVTSW NDGAEALYGF PAAEMLGAPI ATLHPPGSDE PRRILTMVRA GKAIQGLDTL RRTRDGRMAQ VSISVTGLRD HRDGLSGMVV VARDISDRLE LEAELVRQTM HDALTGLPNR SFLTYRLTQA IAEGRRRGRP VAALLLDLDQ FRAANDVHGH LTGDRVLTEV ADRLRVLARP TDVVARIGGD EFVLVCPDTD VAAAGRLAEQ VIEAVGAPIQ VEHRALRVGA SVGIAVAPPL DCDAEVLLKH ADAAMYEAKK RGRARSQVFD PALARLAGEQ RLLAGDLRAA LDDDRLEVHF QPVVDLTSDR MVGFEALTRW HHPTRGAVPP GTFVPIAEAH GFVADLDHWV LDRACRQTAA ALATGELTPG VHVAVNLSAR SLDEPNLVDT VGEVLDRSGL PPAALVLEAT ETALPRDPEA ARASLAGLRD LGVGISLDDF GTGYSSLSFL RELPVTGVKI DRSFIRNAVE RPEDLAITEA IVRLAKGLGL ETIAEGIETA EQRELLRDLG CARAQGFWWS PAVPMAELPG GRAAARVARI LQPAGTADPA PPLRSTRVSR RIIEPSAPTT VVTTCCLRGG IESGQAWLVV TTAARREAFA SSLGPLHATA LARGQLVELD AYETLRRVTS ADGRLDQARY DHVVGSALRR LAAAGDQVGV HAELGHVTRP LLSQDVSTDL RARLHEAAAL TLEYGDHPAD CAAHGPAVAP VVELFAADGS TAG
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