| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_0216 |
|---|
| Symbol | |
|---|
| ID | 4598969 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardioides sp. JS614 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008699 |
|---|
| Strand | - |
|---|
| Start bp | 231838 |
|---|
| End bp | 233535 |
|---|
| Gene Length | 1698 bp |
|---|
| Protein Length | 565 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 639774829 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_921448 |
|---|
| Protein GI | 119714483 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0411] ABC-type branched-chain amino acid transport systems, ATPase component
[COG4177] ABC-type branched-chain amino acid transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.167929 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTGGCTCA ACTACCTCGT CCAGGCCGTG CTCCTGGCCT CGCTCGCCCT GTCGGTGAAC
CTGCTCGTGG GCTACGCCGG CCAGGTGTCG GTCGCGCACG CCGCGTTCGC CGGCGTCGGT
GGCTACACGA TCGCCTACCT GACGACCGCC CGGGACTGGC CGTTCGTCAC CGCCCTGGTC
GCCGCGACCC TGATCGCCGC CGCCGTCGGC GTCGTCATCG GGCTGATCGC CCTCGGCCTG
GCCGAGGAGT TCCTCATCCT GATGACGCTG GCCTTCTCGC TGGCGGTGAT CGGCATCTTC
GCCACCTTCG ACGCTCTCGG GGGCGTCATG GGGATCACCA ACGTCACCGG GCTCTCGATC
CTCGGCCACG AGATGACCGG CCCGCGGGAC TGGCTGGTGC CCGCGCTCGG CACGCTCGTG
GTCACCTTCG CCGTCTGCTG GCGGATCGGC GAGTCGCCGT ACGGCCGGGT GCTCAAGGGC
ATCCGGGAGG ACTCCGACGC GACCCGGTCG CTCGGCAAGA ACACCTTCGC CTACAAGGTC
GGCATCTTCG CGATCACCGC GGGCATGGCC GGCTGGGTGG GCGGCCTGTA CTCCGGGTGG
CTCGGCCTCG CGACCCCCTC GGCGTTCGGC TTCCCGCTGG CCATGTCGGT CTTCGCGATG
GTGATCGTCG GCGGCAGCGC CAACCTGTTC GGGTCGGTGC TCGCCGCGGG CGTGCTCACC
CTCATCGAGC CGACGCTGCG CGAGGCCCTG GCGATGCAGA GCTCCCAGGC CGCGCTCGTG
CAGATCGTGC TGTACGGCGC CCTCCTCGTC GTGATGATGA TCCTGCGGCC GCAGGGCCTG
CTGGCCGAGC GGTTCCGGCA CGTCACGCCA CCAGCGAGCG GCCCGGTCGA GCTGGTGGCG
GAGCGCGGCG CGCCGGTGGT GCGGCGCCTG GACGCGCACC CGGTCGTGCT GCGCGCCGAG
GGCCTCGAGA AGCGCTTCGG CGGCATCGTG GCCGCCCGGA ACCTCAGCCT GGAGCTGCGC
CGCGGGACCA TCACCGCACT GGTCGGCCCC AACGGCGCCG GCAAGACCAC GGCCTTCAAC
CTGCTGACCG GGGCGATCGC CCCCGACCGG GGCAGCGTGC TGCTCGACGG CCAGGAACTG
GTGGGCCGGC GACCCGACGA GATCGTGCGG GCCGGGCTGG TGCGCACCTA CCAGGACGTC
CGGCTGCTGG GCCGGCTCAC CTGCCTGGAG AACGTGATGC TCGGGGTGCC CGACCAGCAC
GGCGAGCACC TGGGCCGGCT GTTCGTGCCC GGCCGCGCGG TCTCCCGCGC CGACCGTGCC
GTCGCCGAGC GGGCCCTGGA GTGGCTGGGG TTCGTGGGGA TGGCCGAGCA GGCCGGCGTG
CCGACCGAGG CGCTGTCCTA CGGCCAGACC AAGCTGGTCT CGCTGGCCCG GGCGCTCGCG
ACCGAGGCGC CGGTGCTGCT GCTCGACGAA CCGGCGTCCG GGGTCGACTC GGCCTGGGTC
GAGACGATGC TCCGGATGAT CGACGCCGTG CGCGCCGAGG GCCGCACGGT CTGCCTGGTG
GAGCACAACC TGGACGTGGT GCGCGAGCTC GCCGACCACA CCTACTTCAT GGAGCTCGGT
GAGATCACCG CGTCCGGGAC CATCGCCGAG CTGACCAGCT CGGCCCGACT CACGGAGGCG
TACTTCGGTG CCCAATGA
|
|---|
| Protein sequence | MWLNYLVQAV LLASLALSVN LLVGYAGQVS VAHAAFAGVG GYTIAYLTTA RDWPFVTALV
AATLIAAAVG VVIGLIALGL AEEFLILMTL AFSLAVIGIF ATFDALGGVM GITNVTGLSI
LGHEMTGPRD WLVPALGTLV VTFAVCWRIG ESPYGRVLKG IREDSDATRS LGKNTFAYKV
GIFAITAGMA GWVGGLYSGW LGLATPSAFG FPLAMSVFAM VIVGGSANLF GSVLAAGVLT
LIEPTLREAL AMQSSQAALV QIVLYGALLV VMMILRPQGL LAERFRHVTP PASGPVELVA
ERGAPVVRRL DAHPVVLRAE GLEKRFGGIV AARNLSLELR RGTITALVGP NGAGKTTAFN
LLTGAIAPDR GSVLLDGQEL VGRRPDEIVR AGLVRTYQDV RLLGRLTCLE NVMLGVPDQH
GEHLGRLFVP GRAVSRADRA VAERALEWLG FVGMAEQAGV PTEALSYGQT KLVSLARALA
TEAPVLLLDE PASGVDSAWV ETMLRMIDAV RAEGRTVCLV EHNLDVVREL ADHTYFMELG
EITASGTIAE LTSSARLTEA YFGAQ
|
|---|
| |