Gene Noca_0099 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNoca_0099 
Symbol 
ID4600072 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNocardioides sp. JS614 
KingdomBacteria 
Replicon accessionNC_008699 
Strand
Start bp111687 
End bp112889 
Gene Length1203 bp 
Protein Length400 aa 
Translation table11 
GC content69% 
IMG OID639774709 
ProductABC-type sugar transport system periplasmic component-like 
Protein accessionYP_921331 
Protein GI119714366 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1879] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGAAGC AGATCCGGTC TGCACCGGGC GTGCGGCCGC GGCGGCTCGC GGTCGCCGCG 
CTCCTGCTGC CCCTCGTCCT GGCGGCCTGC TCCAAGCCGG GCGACCCGGC GTCGGGCGGC
GGCGAGTCCG CGAAGGGCGA GGTCACGCAG GCCGCCACCG ACACGGTCGA GAAGTTCAAG
GCGGTCCCGG ACTTCGTCTC GCCGGGTCCC GCGGTGGACG TCGCGAGCCT GGCCGGCAAG
AGCGTCTTCG TCATCCCGCT GCTGACGACC AACGACTACA ATATCCAGAT CAACGCGGCG
ATGGAGCGGG TCGCGAAGCT CGCGGACGTC GACTTCGAGG TCTACACCAA CGAGGGCCAG
CCCAACCAGT GGGTCGCCGG CATGAACCAG GCGATCGCCA AGGGCGTCGA CGTCATCATC
CTCAGCGGCG GCACCGACCC CCGCGCGCTG GAGCCGCAGA TCAAGGAGGC CCGCGACCGG
GGCATCAAGG TCGTGGTGAG CATGTTCTGG GACACCTCGG CCCAGTTCAC ACCCGACTGC
TCCGGGCTCA GCGTGGACTG CGTCGACGGC GTGGACGCCA TCGTGGCCGC GCCGTACCAG
ACCGCCACGC GCCTGGACGC CGACTGGATC GCCGTCGACT CCGAGGGTGC CGCGAAGATC
CTGGTGGTGA CGTCGAACGA CGCGGGCCCG AGCCCGGGCC AGGAGGCCGC CTTCAAGGAC
GAGATCGCGA CCGCCTGCCC CTCCTGCGAG GCGACGTTCG CCAACGTGCC GATCAGCAAG
TGGACGACCT CCGTGCAGTC GACCGTGCAG TCCGAGCTCG TCCGCAACCC CGACATCGAC
TACGTCGTGC CGCTCTACGA CAACATGGCC AGCTACGCCG TCGCCGCCAT CACCGCGGCC
GGCAAGCAGG GCCAGGTCAA GGTCGTCACC TTCAACGGCA CCCCCGCGGT GCTCAAGATG
ATCCAGGACG GCGACATCGT GACCATGGAC GTCGGGGAGT CCCTCGAGGG TGCCGGGTTC
GCCGCGATGG ACAACGCCTT CCGGCTGATG GCCGGCATGG AGCCCTCGCA GGTGGCCGAC
ATCGTGCCAG TGCGGATCTT CGACACCACC AACATCGACG AGGCCGGCAC CCCGCCGGAG
GTCAACAAGG GCTACGGGGA CGACCTGGAG GCCCAGTACC TCGAGGTCTG GGGCCTCGGG
TGA
 
Protein sequence
MKKQIRSAPG VRPRRLAVAA LLLPLVLAAC SKPGDPASGG GESAKGEVTQ AATDTVEKFK 
AVPDFVSPGP AVDVASLAGK SVFVIPLLTT NDYNIQINAA MERVAKLADV DFEVYTNEGQ
PNQWVAGMNQ AIAKGVDVII LSGGTDPRAL EPQIKEARDR GIKVVVSMFW DTSAQFTPDC
SGLSVDCVDG VDAIVAAPYQ TATRLDADWI AVDSEGAAKI LVVTSNDAGP SPGQEAAFKD
EIATACPSCE ATFANVPISK WTTSVQSTVQ SELVRNPDID YVVPLYDNMA SYAVAAITAA
GKQGQVKVVT FNGTPAVLKM IQDGDIVTMD VGESLEGAGF AAMDNAFRLM AGMEPSQVAD
IVPVRIFDTT NIDEAGTPPE VNKGYGDDLE AQYLEVWGLG