Gene Noc_2960 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNoc_2960 
Symbol 
ID3707342 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrosococcus oceani ATCC 19707 
KingdomBacteria 
Replicon accessionNC_007484 
Strand+ 
Start bp3346098 
End bp3347111 
Gene Length1014 bp 
Protein Length337 aa 
Translation table11 
GC content52% 
IMG OID637739434 
ProducttRNA-dihydrouridine synthase A 
Protein accessionYP_344932 
Protein GI77166407 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0042] tRNA-dihydrouridine synthase 
TIGRFAM ID[TIGR00742] tRNA dihydrouridine synthase A 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTCTTCT CCTATGACTG TAAAAAAACA ATTCAAATGG CGGATTACTC AAAAGCTTAT 
AAAATATCTG TCGCACCGAT GATGGAATGG ACCGATCGGC ACTGCCGTTA TTTTCTCCGC 
CTGATTTCCC ATCGTGCCCT GCTCTATACC GAAATGGTCA CTGCGGGAGC GCTCATTCAT 
GGGAATCGAG CTCGTTTTCT AGCCTATCAT AAGTCTGAGC ATCCCTTGGC TTTGCAACTG 
GGGGGAAGTC ATCCCGAAGA ATTAGCCCTT TGTGCCCAGA TGGCCGAGGA CTATGGGTTT 
GATGAGGTCA ACCTTAATGT GGGCTGTCCC AGCAACCGGG TACAGTCTGG GCGCTTCGGA 
GCCTGTCTGA TGGCGGAGCC TGAGCTGGTT GCCGAATGCG TTGCCGCCAT GGCTCAAGCC 
ACCCAAATCC CGGTAACGGT CAAGACCCGG ATTGGAATCG ATGAGCAGGA CTCCTACGAA 
GCGTTAGACC ACTTCATCAG CACGGTAGCG CAAGCAGGCT GCCGAACTTT TATCATCCAT 
GCCCGCAAAG CTTGGCTGCA AGGCTTGAGC CCCAAGGAAA ACCGAGAAAA ACCTCCCTTA 
CGCTATGATG TGGTGCGGAC CATCAAGCAG GATTTTCCTC AACTGACAGT AATCATCAAC 
GGGGGCATTA CCACTCTGGA GGAGATTTCT GAGCACTTAG AATTATTGGA TGGCGTCATG 
ATTGGCCGGG CGGCCTACCA TAACCCTTAT CTACTTGCCC AAGTGGACCG GAATTTCTAT 
GGAGATTTTC ATCCTTTTCT CACCCGGCAT GAGATTATTG AGGCTTTCTT GCCCTATGTG 
GCAGAGCAAT TGGTCCAAGG CGTGTATTTG AACCATATGA CCCGCCATAT TCTAGGGTTG 
TTCCAAGGCC AACCAGGGGC ACGGGCCTGG CGCCGCCATT TAAGCGAAAA TGCTCATCGG 
CCTGGCGCGG GGATAGAGAT CATCCGGGAA GCCTTACGGC AAATGCCGTG TTAG
 
Protein sequence
MLFSYDCKKT IQMADYSKAY KISVAPMMEW TDRHCRYFLR LISHRALLYT EMVTAGALIH 
GNRARFLAYH KSEHPLALQL GGSHPEELAL CAQMAEDYGF DEVNLNVGCP SNRVQSGRFG 
ACLMAEPELV AECVAAMAQA TQIPVTVKTR IGIDEQDSYE ALDHFISTVA QAGCRTFIIH 
ARKAWLQGLS PKENREKPPL RYDVVRTIKQ DFPQLTVIIN GGITTLEEIS EHLELLDGVM 
IGRAAYHNPY LLAQVDRNFY GDFHPFLTRH EIIEAFLPYV AEQLVQGVYL NHMTRHILGL 
FQGQPGARAW RRHLSENAHR PGAGIEIIRE ALRQMPC