| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_2935 |
|---|
| Symbol | |
|---|
| ID | 3705364 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosococcus oceani ATCC 19707 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007484 |
|---|
| Strand | - |
|---|
| Start bp | 3320347 |
|---|
| End bp | 3321756 |
|---|
| Gene Length | 1410 bp |
|---|
| Protein Length | 469 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637739412 |
|---|
| Product | isopropylmalate isomerase large subunit |
|---|
| Protein accession | YP_344910 |
|---|
| Protein GI | 77166385 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0065] 3-isopropylmalate dehydratase large subunit |
|---|
| TIGRFAM ID | [TIGR00170] 3-isopropylmalate dehydratase, large subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGGAA AAACCCTGTA TGACAAACTT TGGAATTCCC ACGTAGTGCG TACTAATCCA
GGCGGTACTG CATTGCTCTA TATCGATCGG CATCTGGTTC ATGAGGTCAC CTCTCCGCAA
GCTTTTGAGG GACTGCGCCT TGCGGGCCGC AAGCCTTGGC GGAAAGGGGC CAATCTGGCG
GTGCCGGATC ATAATGTACC CACTACCGAC CGCAGCCAGG GCATTCAAGA CCCCATTTCC
CGCATTCAAG TGGAAGCCTT GGACCGGAAT TGCCAGGAAC TGGGTCTGAC TGAATTTAGG
ATGGATGATC CCCGTCAGGG TATCGTTCAC ATCGTTGGCC CGGAACAGGG GGCCACCTTG
CCGGGCATGA CAGTGGTTTG TGGTGACTCC CACACCGCCA CCCATGGTGC CTTTGGCGCC
CTTGCCTTTG GCATTGGCAC CTCTGAAGTG GAGCATGTGC TGGCCACCCA ATGCCTGCTC
CAGAAAAAAT CGAAAAATAT GCTGATTCAG GTCAGTGGCA AGCTGGCCCC CGGGGTGTAT
AGCAAGGATC TCATTTTGGC CATTATTGCC CGTATTGGCA CTGCTGGCGG TACCGGTTAC
ACCATTGAAT TTGCTGGCGA GACCATTCGC GCTCTTTCCA TGGAAGGGCG CATGACTCTC
TGCAATATGG CTATCGAGGC TGGAGCCCGA GCCGGTTTGG TGGCGGTAGA TGAGACGACT
ATTGATTATC TTAAGGGGCG GCCTTTTGCT CCCTCTCCCC ATAGCTGGGG GCAGGCCGTT
AATGCCTGGC AGATGCTGCA AAGCGATCCG GATGCCTCTT TTGATCGGGT GGTTACCATT
GATGCCGCCG CGCTTAAACC CCAAGTGAGT TGGGGCACCT CCCCCGAGAT GGTGGCCTCC
ATTGATGGCC GGGTGCCTGA TCCCCGGCAA GAATCCGATC CCACTAAGCG GGGCGGCATG
GAAAGGGCGT TGGAATATAT GGGGCTTGCC GCCAATACCC CTATCAGTGA GATTCGGCCC
GATATCATCT TTATTGGCTC CTGCACCAAT GCACGGATTG AGGACCTGCG AGAAGCCGCC
AAGGTGGTGG CGGGCCATAA GGTGGCCGGC AATATCAAGC AGGCGCTGGT GGTTCCCGGC
TCCGGGCTGG TAAAACGCCA GGCCGAAACC GAGGGTTTGG ATCAGATTTT TAAAGAGGCG
GGCTTTGAAT GGCGGGAACC TGGCTGCTCC ATGTGCTTGG CCATGAATGC CGACCGCCTG
GAGCCAGAAG AGCGATGCGC TTCCACCTCT AACCGTAATT TTGAAGGCCG TCAAGGGCAA
GGGGGCCGGA CTCATCTGGT GAGCCCGGCC ATGGCCGCGG CGGCGGCTGT TGCCGGCCAT
TTTACGGATG TCTCCACCCT TAACCACTAA
|
|---|
| Protein sequence | MAGKTLYDKL WNSHVVRTNP GGTALLYIDR HLVHEVTSPQ AFEGLRLAGR KPWRKGANLA
VPDHNVPTTD RSQGIQDPIS RIQVEALDRN CQELGLTEFR MDDPRQGIVH IVGPEQGATL
PGMTVVCGDS HTATHGAFGA LAFGIGTSEV EHVLATQCLL QKKSKNMLIQ VSGKLAPGVY
SKDLILAIIA RIGTAGGTGY TIEFAGETIR ALSMEGRMTL CNMAIEAGAR AGLVAVDETT
IDYLKGRPFA PSPHSWGQAV NAWQMLQSDP DASFDRVVTI DAAALKPQVS WGTSPEMVAS
IDGRVPDPRQ ESDPTKRGGM ERALEYMGLA ANTPISEIRP DIIFIGSCTN ARIEDLREAA
KVVAGHKVAG NIKQALVVPG SGLVKRQAET EGLDQIFKEA GFEWREPGCS MCLAMNADRL
EPEERCASTS NRNFEGRQGQ GGRTHLVSPA MAAAAAVAGH FTDVSTLNH
|
|---|
| |