Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Noc_2675 |
Symbol | |
ID | 3704431 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nitrosococcus oceani ATCC 19707 |
Kingdom | Bacteria |
Replicon accession | NC_007484 |
Strand | + |
Start bp | 3030473 |
End bp | 3032266 |
Gene Length | 1794 bp |
Protein Length | 597 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 637739156 |
Product | Lipid A export ATP-binding/permease protein MsbA |
Protein accession | YP_344658 |
Protein GI | 77166133 |
COG category | [V] Defense mechanisms |
COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACGTTTA CTCCTTCCCT GAACTCCGGG CTTGCGGTTT ATCGCCGCCT ACTTAGCTAC ACTCGACCTT ACCGCTGGAT CTTCGCTGCC TCAATTATCA CAATGGCCAT TTATGCAGCG ACTGAAACGG GCCTAGCAGC CCTCATGAAA CCCTTGATGG ACGGAAGCTT CATTGAGCGT GATCCGGCTA CCATCCAGAT TATCCCCCTC CTATTAATTG GGCTCTTTGT GATCCGGGGC GGCGCCAACT TTATCACTCA ATATGGCCTA AAATGGGTGG CTCGCCGTGT TGTGAGGGAC TTGCGGGAAC AGATGTTTTG CCACCTCCTT GCCCTCCCGG CGCGCTACTA TGATCAAAAA GCTTCCGGTC AGCTACTCGC CAAGCTTATT TATGATGTGG AACAGGTTTC CAATGCAGCC ACAGACGCCA TCCTCACTAT CATCCGCGAC TCCCTGACCA TCCTGGGGCT ACTTGCCTGG ATGGCCTATT TAAATGGTTT GCTCACCCTT ATCATTTTAG TCACGGCGCC TCTGATTGCC CTTATCATTT GGTGGGTTAG CCACCGATTC CGCCGTATTA GCCGTAAGAT TCAAAACTCC ATGGGCGATG TCAGCCAGGT GGCCCAGGAA ACCATTGAAG GTCATCGGGA AGTCAAGATA TTTGGTGGGC AAACCTACGA AGCGGAACGT TTCGACCAGG TCAATGAGCA AAACCGCCGG CAAACCATGA AAATGGCGGC CACCGACGCC ATCAGTCAGC CCGTCGTTCA GCTTATCGCC GTGCTAGGGT TAGCCGGTGT CATTCACCTA GCTACCCGCG AATCCATGCT AGCTCAAATT AGCGTGGGTA CCTTTATTTC CTTTATCACC GCCATGATGT TGCTACTTGG CCCTGTTAAG CGCCTTACTA AAATCAACGG GACTTTACAG CGGGGCATTG CCGCGGCTCA AAGCATCTTT GGCCTATTGG CAGAAACACC CGAAGCGGAT CGTGGGCAGC AATCTCTGAG ACGCGCCCGG GGCGCAATCC GCTTTGAACA CTTATCTTTT TGCTATGAAC CTGCCAAAGG TCCAGTGCTT GAAAACATTG ATCTGGAAAT CAAACCGTAC CAAACCATTG CCCTAGTAGG CCATTCAGGC AGCGGCAAAT CCACTTTAGT GAGCTTACTC GCCCGTTTCT ACGAAACTAC TTCTGGGCGT ATCCTCATCG ATGAAATGGA TATCCAAACA CTCCGCCTTA CTGAACTACG CCGGCAAATC GCCCTAGTCA GCCAGCAAAT CATCTTATTC AATGACACCA TCGCCCATAA CATTGCCTAT GGCAGCTACC AACAAACCAG CAAACAAGAC ATCATCCGCG CCGCCGAAGC CGCCCATGCC ATGGAATTTA TTAATCGCTT GCCCGACGGT TTGGACACGG TTATTGGCGA AAAGGGGGTT TTGCTCTCCG GCGGCCAGCG GCAACGTCTC GCGATTGCCA GGGCCCTGCT CAAGGATGCT CCCATCCTCA TTTTAGACGA AGCCACCGCT TCCCTAGACA CCGAGGCTGA ACGGCATATC CAAGCAGCCC TAGAAACCCT GATGCGCCAG CGGACAACGC TGGTTATCGC CCATCGACTA TCCACTGTAG AAAACGCCGA TCAAATCATC GTGCTTCATC AAGGCCAGAT TATAGAAAGA GGAACCCATA GCCAGCTTCT TGCCCGCGAA AGTCACTATG CTGGACTCTA CCGTTTACAA TTTCGCCATA GCCATGAGCA CGTTTCACCC CTGAGCGCAA ATGTCGGATT ATAG
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Protein sequence | MTFTPSLNSG LAVYRRLLSY TRPYRWIFAA SIITMAIYAA TETGLAALMK PLMDGSFIER DPATIQIIPL LLIGLFVIRG GANFITQYGL KWVARRVVRD LREQMFCHLL ALPARYYDQK ASGQLLAKLI YDVEQVSNAA TDAILTIIRD SLTILGLLAW MAYLNGLLTL IILVTAPLIA LIIWWVSHRF RRISRKIQNS MGDVSQVAQE TIEGHREVKI FGGQTYEAER FDQVNEQNRR QTMKMAATDA ISQPVVQLIA VLGLAGVIHL ATRESMLAQI SVGTFISFIT AMMLLLGPVK RLTKINGTLQ RGIAAAQSIF GLLAETPEAD RGQQSLRRAR GAIRFEHLSF CYEPAKGPVL ENIDLEIKPY QTIALVGHSG SGKSTLVSLL ARFYETTSGR ILIDEMDIQT LRLTELRRQI ALVSQQIILF NDTIAHNIAY GSYQQTSKQD IIRAAEAAHA MEFINRLPDG LDTVIGEKGV LLSGGQRQRL AIARALLKDA PILILDEATA SLDTEAERHI QAALETLMRQ RTTLVIAHRL STVENADQII VLHQGQIIER GTHSQLLARE SHYAGLYRLQ FRHSHEHVSP LSANVGL
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