Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Noc_2575 |
Symbol | |
ID | 3704579 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nitrosococcus oceani ATCC 19707 |
Kingdom | Bacteria |
Replicon accession | NC_007484 |
Strand | + |
Start bp | 2929403 |
End bp | 2930251 |
Gene Length | 849 bp |
Protein Length | 282 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 637739055 |
Product | quinate/shikimate 5-dehydrogenase |
Protein accession | YP_344558 |
Protein GI | 77166033 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0169] Shikimate 5-dehydrogenase |
TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.303834 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCAGACC GTTACGCCGT CATGGGCAAT CCTATTGCTC ATAGCAAATC ACCTCAAATT CATACCGCTT TTGCTCAGCA AACAGGCCAA GCACTCACCT ATACGGGGCT CCAGGTAGAA GCTGGCAAGC TAGCAGAAGC CATCACTGCA TTCCAGCAGC AAGAGGGTAA AGGATTAAAT ATTACCATTC CCTTGAAAGC TGAAGCCTGG AGGTTGGTAG ATCAATGCAG CCCTCAAGCG CAGCGGGCCA AGGCGGTAAA TACCATTCTC TTAGAAAAGA ACGGAGCACT CCTAGGTGAT AATACCGATG GCGTAGGATT GGTACGGGAT CTTATTAATA ACCACGGAGG CCGCATTACC GGGCAGCAAG TTCTGCTGCT TGGGGCTGGC GGCGCAGCTT CTGGCGTTAT AGAAGCATTA CTGAAAGAAC ACCCTTCCCA CCTTATTATC GTTAACCGCA CTCCGGCCAA AGCTATTGAG CTAGCAGCTC GATTTAGCCC GTTTGGGGCA ATTACCGGCG GCGGCTATGA ACTACTTGAA AATAATTCTT TCCATCTCAT TATTAATGCT ACCGCTAGTA GCCTTCAAGG CGAACTCCCG CCCCTTCCCA GAGGGATATT GCGTTCTGGT GGCTGGGTTT ACGATATGAT GTATGGCAAT GAACCCACCA TTTTCATGAA ATGGGGCCAA ACTCACGGGG CGGCACGGTC ACTAGATGGA TTAGGAATGC TAGTAGAACA AGCTGCGGAA GCGTTTTTCA TTTGGCGTAA GGTACGCCCG AAATCAGCGC CGATTATTGC ACAATTGAGG CGGGAAATGG ACATTAAAAA CCCCGCGATG CCGCTGTGA
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Protein sequence | MPDRYAVMGN PIAHSKSPQI HTAFAQQTGQ ALTYTGLQVE AGKLAEAITA FQQQEGKGLN ITIPLKAEAW RLVDQCSPQA QRAKAVNTIL LEKNGALLGD NTDGVGLVRD LINNHGGRIT GQQVLLLGAG GAASGVIEAL LKEHPSHLII VNRTPAKAIE LAARFSPFGA ITGGGYELLE NNSFHLIINA TASSLQGELP PLPRGILRSG GWVYDMMYGN EPTIFMKWGQ THGAARSLDG LGMLVEQAAE AFFIWRKVRP KSAPIIAQLR REMDIKNPAM PL
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