| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_2362 |
|---|
| Symbol | |
|---|
| ID | 3704802 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosococcus oceani ATCC 19707 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007484 |
|---|
| Strand | - |
|---|
| Start bp | 2707159 |
|---|
| End bp | 2708598 |
|---|
| Gene Length | 1440 bp |
|---|
| Protein Length | 479 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637738845 |
|---|
| Product | sigma-54 dependent trancsriptional regulator |
|---|
| Protein accession | YP_344350 |
|---|
| Protein GI | 77165825 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGCTG ATATCGTATT GATTTTGGGA GATAATGGAA AAGAGCATGC TCAAGCTCTG
CAAACCATTA TCGAGTTCAT TGGTTACCGT CCGGTGCTGG TTGAGCAAGG CGAGCAATGG
CAAGAAATAG TCACCGATCC CAAGGCTGTT GCGGCGGCGC TAATTGGTAG TTGGAGTGGG
GATAAGCAAA AAATAGCTGC CACAATTAAA ACATTAAATA ATGAAGAAGC GCAGTTACCC
GTATTTGTGC TGGTACCAAA GGAAAGTGTT TCAGGTAAAG AATCCTGGCG TTTGCCGGGC
GCGCTAGGGA GGCTACGTTA TCCTTTTTCC CAAACGGAAC TCACCAGCGC TTTGCAGAAT
GCTGAGCTTT TTCGCGAAGG CCACCAACAA AAAGGGCAAG ATAGAAGATC AGTAGAGCTA
TTTCGGAGCT TGGTGGGCAA TAGCCGCGCT ACCCGGACTG TTCGTCATCT GATAGAGCAA
GTGGCTGATT CCAACGCTAC CGTCCTAATT TTGGGAGAGT CCGGGACTGG TAAAGAAGTT
GTAGCTCGTA ACCTCCATTA CCATTCCTCG CGGCGGGGGA ATCCCTTTGT GCCAGTCAAT
TGTGGTGCTA TTCCGGGTGA GTTGCTGGAA AGCGAACTCT TTGGTCACGA AAAAGGGGCC
TTTACTGGAG CTATCACGGC CCGTCAAGGA CGATTTGAGC TGGCGCAAAA GGGAACGTTA
TTTCTGGACG AGATTGGCGA TATGCCCATG GCCATGCAGG TGAAGCTGCT GCGGGTATTG
CAGGAGCGGA CTTTTGAGCG GGTAGGAAGC AATAAGCTCA TTCATGTCGA TGTACGTATC
ATTGCCGCAA CCCACCGTAA TCTAGAAGAG CAGCTTCAGG AAGGAAATTT CCGCGAGGAT
CTTTATTACC GCCTCAATGT CTTTCCTATT GAAATGCCCC CTTTGCGAGA GCGAGTCGAA
GATATTCCCT TGCTTATCAA TGAGATTATT ACCCGGATTG AGCATGAAAA AGGCGCCTCT
GTTCGTTTAA CTCCAGCGGC GGTTATGGCT TTGTGTCAAT ATCCGTGGCC AGGCAACGTC
AGGGAGCTTG CTAATCTGGT TGAGCGTTTG ACCATCTTAC ACCCCTATGG TGTGGTGGAT
CATTATGATT TACCTGAAAA ATACCGAATA GAGGGGGAGG GAATTTCCCC TTCTGCTCCT
GAGTTGGCAT CCTTAGAGAG GGTTGTGGAT ACCTTGGAAA CTCCCCGCTT GCCACGAGAA
GGTTTGGATC TTAAGAAGCA CCTTAGCTGC ATTGAGCGCT CGCTTATCAA GCAAGCCCTA
GAGGAAGCCG ACGGTGTAGT GGCTCAAGCT GCTCATCGAT TGCGGATGCG GCGTACAACA
TTGGTTGAAA AACTTCGCAA ATATGACATC CAGCGAGAGG ATGTTGCGCC AAGAGTTTGA
|
|---|
| Protein sequence | MPADIVLILG DNGKEHAQAL QTIIEFIGYR PVLVEQGEQW QEIVTDPKAV AAALIGSWSG
DKQKIAATIK TLNNEEAQLP VFVLVPKESV SGKESWRLPG ALGRLRYPFS QTELTSALQN
AELFREGHQQ KGQDRRSVEL FRSLVGNSRA TRTVRHLIEQ VADSNATVLI LGESGTGKEV
VARNLHYHSS RRGNPFVPVN CGAIPGELLE SELFGHEKGA FTGAITARQG RFELAQKGTL
FLDEIGDMPM AMQVKLLRVL QERTFERVGS NKLIHVDVRI IAATHRNLEE QLQEGNFRED
LYYRLNVFPI EMPPLRERVE DIPLLINEII TRIEHEKGAS VRLTPAAVMA LCQYPWPGNV
RELANLVERL TILHPYGVVD HYDLPEKYRI EGEGISPSAP ELASLERVVD TLETPRLPRE
GLDLKKHLSC IERSLIKQAL EEADGVVAQA AHRLRMRRTT LVEKLRKYDI QREDVAPRV
|
|---|
| |