Gene Noc_2001 details

Gene Information

• Locus tag: Noc_2001
• ID: 3704886
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nitrosococcus oceani ATCC 19707
• Kingdom: Bacteria
• Replicon accession: NC_007484
• Strand: -
• Start bp: 2306097
• End bp: 2307950
• Gene Length: 1854 bp
• Protein Length: 617 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 637738478
• Product: dihydroxy-acid dehydratase
• Protein accession: YP_343993
• Protein GI: 77165468
• COG category: [E] Amino acid transport and metabolism; [G] Carbohydrate transport and metabolism
• COG ID: [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase
• TIGRFAM ID: [TIGR00110] dihydroxy-acid dehydratase

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.181202
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCCGCTT ATCGATCCCG AACGACGACT CACGGTCGTA ATATGGCTGG TGCCCGGGCC 
TTGTGGCGGG CCACCGGTAT GAAAGAGGGC GATTTTGGTA AGCCCATTAT TGCCATTGCC 
AATTCTTTTA CTCAGTTCGT CCCCGGTCAT GTCCACCTCA AGGATTTAGG ACAGCTAGTC 
GCCCGGGAGA TTGAAAAAGC CGGGGGGGTG GCCAAGGAAT TTCATACTAT TGCCGTGGAT 
GACGGAATTG CCATGGGGCA TAGTGGCATG CTGTATTCTC TGCCTTCGAG GGAAATCATT 
GCCGATTCAG TAGAATACAT GGTCAATGCC CACTGCGCCG ATGCTTTGGT GTGCATTTCT 
AATTGTGACA AGATTACTCC GGGTATGCTG ATGGCTGCCA TGCGCTTAAA TATTCCAGCA 
GTATTTATCT CGGGTGGGCC CATGGAAGCG GGCAAGGTTA AAATTCGGGG TAAGAGTGTA 
AGCTTAGATT TGGTAGATGC CATAGTGGCG GCGGTTGACC CTGCTGAAAG CGATGCCGAT 
GTAATGGCCT ATGAGCGCTC AGCTTGTCCT ACCTGCGGTT CTTGCTCCGG GATGTTCACT 
GCTAACTCGA TGAATTGCCT GACCGAAGCC TTGGGGTTAG CGTTGCCAGG CAATGGTTCC 
TTGCTGGCGA CTCATGCTGA CAGGAAAGAA TTGTTCCTAG AAGCAGGACG CTTGATTGTG 
GCGTTGGCAA AACGTTATTA CGAGCAGGAT GATGAAACTG TTTTGCCGCG CTCAATTGCT 
AATTTTGGGG CTTTTGAGAA TGCCATGAGT CTGGATATCG CTATGGGCGG TTCGACTAAT 
ACGGTGCTTC ACTTGCTGGC CGCTGCTCAG GAAGGGGGAG TGGATTTCAC GATGGCGGAT 
ATTGATCGCT TGTCCCGTAA GGTGCCCAAT TTGTGTAAAG TGGCTCCTGC AACGCCAGAA 
TATCACATGG AGGATGTTCA CCGGGCGGGG GGTGTCATTA GTATTTTGGG GGAATTAGAT 
CGGGCAGGAT TGATCCATCG CCAAATGGCA ACCGTTCATA GCCCGACCTT GGGCGCGGCG 
CTTGACCAAT GGGATATCGT CCGTTCCAGC TATGAGGCTG CCCAGAGTCG CTATCTTGCC 
GCTCCGGGGG GTGTCCCTAC CCAAGTGGCT TTTAGCCAAG GGAATCGCTG GGAAAGTCTG 
GATTTGGATA GGGCGCAAGG TTGTATTCGC GATATTGCCC ATGCTTACAG CAAGGATGGG 
GGGTTGGCGG TGCTTTATGG TAACCTCGCA AAGGATGGTT GTATTGTCAA GACTGCTGGA 
GTAGACCCGT CGATATTGAT TTTTTCCGGG CCGGCCCGGC TATTTGAGAG TCAGGAGGCG 
GCGATAGCAG CTATTCTGGG AGATAAAATT CAGCCGGGTG ACGTTGTGCT TATTCGTTAT 
GAAGGCCCCA AGGGGGGACC TGGAATGCAG GAGATGCTCT ATCCCACCAG TTATCTGAAA 
TCTAAAGGAT TAGGCGAAGT CTGTGCGCTC ATCACGGATG GCCGCTTCTC TGGAGGGACT 
TCGGGACTTT CTATTGGCCA CGTTTCTCCT GAAGCGGCTG AAGGTGGCAC CATCGGTTTG 
GTGGAGGAAG GTGACAGAAT TGAAATCGAC ATTCCTCATC GGCGTATTCA TCTCGCAGTG 
GACGAGGAGG AATTAGCACA GCGCCAAAGA GCCATGGAGG CAAAGGCGCA GCAGGCTTGG 
CGGCCAGTTA ATCGCAATCG TACTGTATCC CTGGCGCTGC AGGCCTACGC GGCGCTCACC 
ACCTCAGCAG CGAAAGGTGC GGTTCGGGAC TTGGGGCAAC TTAATAGATC ATAG 

 

Protein sequence

MPAYRSRTTT HGRNMAGARA LWRATGMKEG DFGKPIIAIA NSFTQFVPGH VHLKDLGQLV 
AREIEKAGGV AKEFHTIAVD DGIAMGHSGM LYSLPSREII ADSVEYMVNA HCADALVCIS 
NCDKITPGML MAAMRLNIPA VFISGGPMEA GKVKIRGKSV SLDLVDAIVA AVDPAESDAD 
VMAYERSACP TCGSCSGMFT ANSMNCLTEA LGLALPGNGS LLATHADRKE LFLEAGRLIV 
ALAKRYYEQD DETVLPRSIA NFGAFENAMS LDIAMGGSTN TVLHLLAAAQ EGGVDFTMAD 
IDRLSRKVPN LCKVAPATPE YHMEDVHRAG GVISILGELD RAGLIHRQMA TVHSPTLGAA 
LDQWDIVRSS YEAAQSRYLA APGGVPTQVA FSQGNRWESL DLDRAQGCIR DIAHAYSKDG 
GLAVLYGNLA KDGCIVKTAG VDPSILIFSG PARLFESQEA AIAAILGDKI QPGDVVLIRY 
EGPKGGPGMQ EMLYPTSYLK SKGLGEVCAL ITDGRFSGGT SGLSIGHVSP EAAEGGTIGL 
VEEGDRIEID IPHRRIHLAV DEEELAQRQR AMEAKAQQAW RPVNRNRTVS LALQAYAALT 
TSAAKGAVRD LGQLNRS