Gene Noc_2000 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNoc_2000 
Symbol 
ID3704885 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrosococcus oceani ATCC 19707 
KingdomBacteria 
Replicon accessionNC_007484 
Strand+ 
Start bp2305203 
End bp2305781 
Gene Length579 bp 
Protein Length192 aa 
Translation table11 
GC content48% 
IMG OID637738477 
Productcytochrome c, class I 
Protein accessionYP_343992 
Protein GI77165467 
COG category[C] Energy production and conversion 
COG ID[COG3245] Cytochrome c5 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.0804521 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACAAAC AAATTCATAA AATGAATTTT CTTTCCCCTC AATGCCTGCT TTCTATTATG 
GGTATGGGAA TAGTTACTCT TTCCCTCTTA GCTGCTGGAT GCACGGAACA AACTGCCGAA 
ACCAGTTCTC CAGAAGCCAT CGCTAAGCGT ATCGAACCAG CGGGGAAAGT AAATATTGCC 
TCCGCACCGG AAAAAACCAG CGAAACGCCC GATACCCCTG CAAGCTCTGA AGAAAAATCA 
CCAGCAGCAC CTGCTCCTGC AAAAAACAAA GAAAACGCCC CGGCTGCTAA CAATGACGAG 
ACACCGCCAG CCACTAAGGG AAAAGAGTCC CAGCTCAACC ATGGCAAAAC AATAGTTAAA 
AATAGTTGTG CCGCTTGCCA CACCGGCAAT TTGCCGGGAG CCCCCGTGAT TGGGAATGCG 
GAAGACTGGA CGCCTCGCCT TACTCAAGGC GTGGAAATTC TAACTCAACA TGCCACCCAA 
GGTTACAAGG CTATGCCGCC CAAAGGCGGT AATCCTAACC TCAGTGATGA AGACATCGCC 
GCTGCAATTG CTTACCTTAT TTCCCAATTA GAAAAATAA
 
Protein sequence
MNKQIHKMNF LSPQCLLSIM GMGIVTLSLL AAGCTEQTAE TSSPEAIAKR IEPAGKVNIA 
SAPEKTSETP DTPASSEEKS PAAPAPAKNK ENAPAANNDE TPPATKGKES QLNHGKTIVK 
NSCAACHTGN LPGAPVIGNA EDWTPRLTQG VEILTQHATQ GYKAMPPKGG NPNLSDEDIA 
AAIAYLISQL EK