Gene Noc_1758 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNoc_1758 
Symbol 
ID3704775 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrosococcus oceani ATCC 19707 
KingdomBacteria 
Replicon accessionNC_007484 
Strand
Start bp1977912 
End bp1980014 
Gene Length2103 bp 
Protein Length700 aa 
Translation table11 
GC content51% 
IMG OID637738241 
ProductPAS sensor diguanylate cyclase/phophodiesterase 
Protein accessionYP_343760 
Protein GI77165235 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.250633 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGCGCC ACCAGCACCG CGGAATTAAC AAAATGCGGG GGCTGCGAGT ATTAATCGTG 
GAAGATTCTG AAGATGACGC TCTCCTCCTG GAGCGCCACC TTCGGCGCGG TGACTACCAG
CCTTTCGTTA AACGGGTCGA AACCCGGGAA ACTATGCTCG CAGCACTCCA AACCCAGCCC
TGGGACATTA TACTCTCAGA TCACAGCCTA CCTCATTTTG GCTCCATGGA CGCCTTGACT
TTGCTGCAAA AAGAAAGCAT TGATATACCT TTTATCATGG TCTCTGGCAC AGTAGGGGAG
GATCGCGCCG TTGAAATCAT GAAGGCTGGC GCCCACGACT ATATCATGAA GGATAATTTG
CGCCGCCTGG TTCCCGCAGT AGAGCGGGAA TTACGCGAGG CCAACATCCG GCGGCAGCGC
CAAGCCGTGG AAAACGAGCG CGCCCGTCTA AGCTCCATCC TGGAAGCTAC CCCCGATCTG
GTGGCCATCA TGGACCTTGA AGGCCGTATT CACTATATGA ACCAGGCGGG CCGCCAGTGG
CTCGGCTTTA TTAAAAAAAA CCATTATGCC GGAGCGTCAC TGCTCGCGCA TTATCCCTTA
TGGACAGCCT CCCTGATACG GGACACGGCA ATCCCCGCCG CTTTACGGGA AGGAGTCTGG
GAAGGAGAAG CTGTTATTTT GAATCCCAGT GGCGGAGAAA TTCCGGTCTC CCAAGTGATC
CTTTCCCATC GAAATGCCCT TAACCAAGTT GAGTTCCTCT CCACCATTGC CCGGGATATC
AGCGAACGTA AGCACTATGA GCAAGAATTA CAATACCGGG TTACCCACGA TACCCTCACC
CACCTCCCCA ACCGGATTTT GCTCCGGGAC CGGCTGATTC AAGTCCTAGC CCACGCTAAA
CGCAATCAGC GCCTGACCGC GGTCCTGTTT CTGGATGTGG ACAATTTTAA ACAAATCAAC
GACGGTTTGG GGCACTTAAC CGGAGATAAG TGCCTACGTA CCCTTGCGCA CCATCTGGCA
GGCTGTATTC GTGAGAGTGA CACCCTCGGG CGCTATGGAG GCGATGAGTT TCTAATTATT
CTCAGTGACT TACGTAGTTA CTCTGATGTA GAAACCCTTA TAAAAAAAAT TCGCGCCACC
GTGAGCCAGC CCCTCAAGCT TAATAATAAT GATGTCTTTA TCACCTTGAG CATCGGCGTT
TCCCTTTATC CCCAGGATGG TGATGATGAG GAAGCACTAT TAAAAACTGC CGATGCCGCT
ATGCACACCG CTAAGCATAG TAGTCCGGGG CAATGCCGAT ACTATCGCCC TGAGATGAAT
GTTCGAGGAA GTGAATTACT CGCCCTGGAG ACGGATCTCC ACCGTGCCTT GGAACGAGAA
GAATTTGTCC TTTATTATCA ACCGCAATTA GACGTTACGA CTGGCCAGAT CACCGCAGTA
GAAGCATTGA TACGTTGGCA GCATCCTAAC CGCGGATTGG TTTCTCCTAG AGACTTCATT
CCGCTGCTGG AACAAACCGG CCTTATCGAA GAGGTGGGTA AGTGGGGGCT AAACACGGCT
TGTAGACAAG CTAAAGCCTG GCATTCACAA GGCTATCCCA TCCGCATGGC GGTTAATTGT
TCTGCCCGCC AGTTTCAACA GCATTTTCTG GATATCGTAC ATCAAATTCT CCAGAAACAG
TCATTAGACC CCGCCTACCT TGAACTTGAA GTCACAGAAA GCGTCGTGAT GCAAGATACG
CAATCGGCAA CCTATATTTT ACAACGCCTC AAGGAAATGG GCGTCACCTT AGCCATTGAC
GATTTTGGTA CCGGTTATTC ATCGCTTGCT TATCTTAAAC GTTTCCCTAT CCATAGCCTG
AAAATTGACT GCTCATTCGT CCGCGACGTC ACTAAAAATG AAGAAGATGC GGCCATTGCC
GAAACGATTT TGCTGCTCGG AAACAGTTTG GGACTCGAAG TGGTGGCCGA AGGCGTAGAA
ACAGAAGCCC AAATGCGGTT CTTTCAAGAC CGCCACTGCC ATCGCATCCA AGGCTATTGG
ATCGGGCGGC CCATGCCTGC TAAAGATCTT TTCCCGTTAA TTACTGGCAG AAATAACCCC
TAG
 
Protein sequence
MKRHQHRGIN KMRGLRVLIV EDSEDDALLL ERHLRRGDYQ PFVKRVETRE TMLAALQTQP 
WDIILSDHSL PHFGSMDALT LLQKESIDIP FIMVSGTVGE DRAVEIMKAG AHDYIMKDNL
RRLVPAVERE LREANIRRQR QAVENERARL SSILEATPDL VAIMDLEGRI HYMNQAGRQW
LGFIKKNHYA GASLLAHYPL WTASLIRDTA IPAALREGVW EGEAVILNPS GGEIPVSQVI
LSHRNALNQV EFLSTIARDI SERKHYEQEL QYRVTHDTLT HLPNRILLRD RLIQVLAHAK
RNQRLTAVLF LDVDNFKQIN DGLGHLTGDK CLRTLAHHLA GCIRESDTLG RYGGDEFLII
LSDLRSYSDV ETLIKKIRAT VSQPLKLNNN DVFITLSIGV SLYPQDGDDE EALLKTADAA
MHTAKHSSPG QCRYYRPEMN VRGSELLALE TDLHRALERE EFVLYYQPQL DVTTGQITAV
EALIRWQHPN RGLVSPRDFI PLLEQTGLIE EVGKWGLNTA CRQAKAWHSQ GYPIRMAVNC
SARQFQQHFL DIVHQILQKQ SLDPAYLELE VTESVVMQDT QSATYILQRL KEMGVTLAID
DFGTGYSSLA YLKRFPIHSL KIDCSFVRDV TKNEEDAAIA ETILLLGNSL GLEVVAEGVE
TEAQMRFFQD RHCHRIQGYW IGRPMPAKDL FPLITGRNNP