Gene Noc_1175 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNoc_1175 
Symbol 
ID3706749 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrosococcus oceani ATCC 19707 
KingdomBacteria 
Replicon accessionNC_007484 
Strand
Start bp1284469 
End bp1286238 
Gene Length1770 bp 
Protein Length589 aa 
Translation table11 
GC content52% 
IMG OID637737679 
ProductTrkA-C, di- and tricarboxylate transporters 
Protein accessionYP_343208 
Protein GI77164683 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0471] Di- and tricarboxylate transporters 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTCCTG AAGCGTGGCT GACCCTAGGC GTTATCGTCC TTATCCTGGG ACTATTAATA 
TTCACCCGCA AACCTCCTGA CGTTATTGTG GTCGGTGGAG TAACCTTGCT GTTATTCAGT
GGCGTGCTTA CCCCTGAAGA AGCATTAGCC GGTCTATCCA ATCCCGCAAT GGCGACGGTA
GGGGTATTAT TTATCGTCGC CGTGGGCCTG CGTGAAACCG GCAGTATCGA TTGGCTGGCT
CACCACCTAT TGGGCAATGG ACGTTCGTTA GTTCGGCTGC AAGCCCGGAT TATGGGGCCC
ACCGTTGCCA TAAGCGCTTT TATGAACAAT ACCCCCGTGG TGGCCATGCT CATCCCAGCC
ATCACCGATT TTGCCCGCCG GCATCGTCTC TCCACCTCAA AACTAATGAT TCCCCTAAGT
TATGCGGCTA TTTTAGGAGG AACTTGCACC CTCATCGGCA CCAGTACTAA TTTAGTCGTT
AATAGCCTGT TAATCGAGCA AACCGGGCAG GCAGAACTAG GCTTATTTGC CATTGCTTGG
GTGGGACTGC CCGTTGCAAT AATAGGAATT ATTTATGTAC TCCTATTCGG ACGTTGGCTA
CTCCCTGATC GGAAGCCCGT CTTCAGCCAC TGGAACGATC CGCGGGAATA TACCCTAGAA
ATGCTGCTCC AGCCCAACAG CCCCCTCGTG GGGCGGACGA TTGAGGACGC GGGCCTACGT
AATTTGCCGG GCATGTACCT CGTCGAAATC AACCGTCAAA ATCAGATAAT CCCAGCAGTA
CGGCCCAACG AGAAGCTCCA GCCCCATGAT CGATTAGTCT TTGTGGGAAT TATTGATACG
GTCAAAGATC TACAAAAGAT TCGCGGGTTA ATGCCCGCAA CTGAGCAGGT GTTCAAACTC
GATTCACCCC GTGCCGAACG CTGCCTGATT GAGGCGGTAG TGTCCAATAC CTGCCGCTTG
ATTGGAACCA CTATCCGCGC AGGCCAATTC CGCAGTGTCT ATAATGCAGT CGTCATTGCC
GCGGCTCGTA ATGGGGAAAG AATAAGAGGC AAGATTGGCG ATATCATCCT GCAGCCTGGG
GATACGCTGC TTCTAGAAAC TCGCCCTTCC TTTTTAGAGC AGCAACGCAA CTCACGGGAT
TTTTTCCTAG TCAGTGAAGT TGCCGACTCC AACCCGCCCC GTCATGACCG GGCCTGGATA
GCCCTTATCG TCCTGGCACT TATGGTAATA GTCGTTACTT TACAATGGCT TAGCTTGCTA
GAGGCCGCTC TTACCGCCGC CGGCCTCATG CTTGCAACGG GCTGCCTTCA AATCGCAACC
GCACGCCGCA GCGTAGATTG GCAGGTGCTT ATCGTCATCG CAGCCTCCCT TGCCCTTGGC
CAAGCATTGC AAAATACCGG CGCCGCTGCA CATATTGCTC ATATCGTACT AAAACTTATT
GGCGATAACC CGTGGGGAGT GCTTGCCGCA GTGCATTTTC TCACCGCCCT CATGACGGAA
CTCATCACCA ACAATGCCGC CGCCGTACTC ATGTTCCCTA TTGCCTTGGC GGCCGCCGAT
AGCCTTGGGG TTAATTTCAC GCCCTTTGCC ATTTCCATCA TGGTCGCTGC CTCGGCCAGC
TTTGCAACCC CGATAGGCTA TCAAACTAAT TTAATGGTGT ATGGCCCTGG CGGCTATCAT
TTTACCGATT ACCTTCGTAT CGGCCTTCCT CTTAATTTCT TAGTATGGAG TATGACCGTT
TTTATCGCTC CCCAAATATG GTCATTTTAA
 
Protein sequence
MSPEAWLTLG VIVLILGLLI FTRKPPDVIV VGGVTLLLFS GVLTPEEALA GLSNPAMATV 
GVLFIVAVGL RETGSIDWLA HHLLGNGRSL VRLQARIMGP TVAISAFMNN TPVVAMLIPA
ITDFARRHRL STSKLMIPLS YAAILGGTCT LIGTSTNLVV NSLLIEQTGQ AELGLFAIAW
VGLPVAIIGI IYVLLFGRWL LPDRKPVFSH WNDPREYTLE MLLQPNSPLV GRTIEDAGLR
NLPGMYLVEI NRQNQIIPAV RPNEKLQPHD RLVFVGIIDT VKDLQKIRGL MPATEQVFKL
DSPRAERCLI EAVVSNTCRL IGTTIRAGQF RSVYNAVVIA AARNGERIRG KIGDIILQPG
DTLLLETRPS FLEQQRNSRD FFLVSEVADS NPPRHDRAWI ALIVLALMVI VVTLQWLSLL
EAALTAAGLM LATGCLQIAT ARRSVDWQVL IVIAASLALG QALQNTGAAA HIAHIVLKLI
GDNPWGVLAA VHFLTALMTE LITNNAAAVL MFPIALAAAD SLGVNFTPFA ISIMVAASAS
FATPIGYQTN LMVYGPGGYH FTDYLRIGLP LNFLVWSMTV FIAPQIWSF