Gene Noc_1013 details

Gene Information

• Locus tag: Noc_1013
• Symbol: leuD
• ID: 3707274
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nitrosococcus oceani ATCC 19707
• Kingdom: Bacteria
• Replicon accession: NC_007484
• Strand: +
• Start bp: 1121378
• End bp: 1122022
• Gene Length: 645 bp
• Protein Length: 214 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 637737518
• Product: isopropylmalate isomerase small subunit
• Protein accession: YP_343051
• Protein GI: 77164526
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0066] 3-isopropylmalate dehydratase small subunit
• TIGRFAM ID: [TIGR00171] 3-isopropylmalate dehydratase, small subunit

Plasmid Coverage information

• Num covering plasmid clones: 28
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAACCGT TGACGGTAGT AGAAGGTTTA GTGGTCCCCT TAGACCGGGC CAATGTAGAT 
ACCGATGCTA TTATTCCCAA GCAATTTCTA AAGTCGATTA AGCGTACCGG CTTTGGTCCC 
AACCTATTTG ATGAATGGCG CTACTTAGAT CATGGGGAGC CTGGGAAGGA CTGTCGTCAT 
CGGCCTCTTA ATCCAGAATT TGTCCTTAAT CAGCCTCGTT ACCAGGGCGC GAATATTTTG 
CTTGCGCGAG ATAACTTTGG TTGTGGCTCG AGCCGGGAAC ATGCGGTTTG GGCATTGGTG 
GATGATGGCT TCCGGGTAGT GATTGCCCCC AGTTTCGCGG ATATCTTTCA TAGCAACGCC 
TTTAAAAATG GCCTCCTGCC GATCATTCTG GATGAGGATA GTGTGACCAC GTTGTTTAAG 
GATACCGAAG CGACCCTCGG CTACCGCCTG CGGATTGATT TACCCGCTCA GGAAGTGACT 
ACCCCTGAAG GGAAGGTAAT GCCTTTTACC ATTGATGAGT TCCGTAAGCA TTGTCTTATG 
GAAGGATTGG ATGAGATTGG GCTAACCTTG CAGTATAGGG ATGAGATCCG CGCCTACGAA 
GAGCGGCGGC AGGTTGAAGC CCCGTGGTTA TTTGAGAAGG GATAA 

 

Protein sequence

MEPLTVVEGL VVPLDRANVD TDAIIPKQFL KSIKRTGFGP NLFDEWRYLD HGEPGKDCRH 
RPLNPEFVLN QPRYQGANIL LARDNFGCGS SREHAVWALV DDGFRVVIAP SFADIFHSNA 
FKNGLLPIIL DEDSVTTLFK DTEATLGYRL RIDLPAQEVT TPEGKVMPFT IDEFRKHCLM 
EGLDEIGLTL QYRDEIRAYE ERRQVEAPWL FEKG