| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_0943 |
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| Symbol | |
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| ID | 3707334 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrosococcus oceani ATCC 19707 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007484 |
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| Strand | - |
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| Start bp | 1041349 |
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| End bp | 1043334 |
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| Gene Length | 1986 bp |
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| Protein Length | 661 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 637737452 |
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| Product | cytochrome c-type biogenesis protein CcmF |
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| Protein accession | YP_342985 |
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| Protein GI | 77164460 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1138] Cytochrome c biogenesis factor |
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| TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.190679 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTCCAG AACTTGGACA ACTCGCACTG ATTTTAGCCC TCACCCTAGC CTTCTCCCAG
GCAATATTGC CTCTTATTGG CGCTCAGCGT GGAATCATAG GCTGGATGAA TGTAGCACGA
ACTGCCGCTT ACGGTCAGTG TTTCTTCCTA ATCGTTGCCT TCACCTGCCT GGCTATCAGC
TTTCTCAATA ATGATTTTTC CGTAGCCTAT GTAGCCAATA ATTCTAATTC CGCGCTACCA
CCAGCCTATC GTTTTGCCGC CATCTGGGGG TCCCACGAAG GATCACTATT ACTGTGGAGC
CTAACTCTAG GCCTGTGGAC AGTAGCTGTG GCCTTATTTA GCCGTAGCAT ACCATTAGCC
TATGTGGCCC GTGTGCTAGC CGTCATGGGC ATGGTTAATG TGGGCTTTCT GTTATTTATG
CTCCTAACCT CTAATCCATT TTTACGTCTT TTCCCCGCCC CCTTAGACGG ACAAGATCTC
AATCCTTTAT TGCAAGACCC CGGCCTAGTG ATGCACCCCC CCATGCTCTA TATGGGTTAT
GTGGGCTTTT CCGTGGCCTT TAGCTTTGCC ATTGCGGCGC TTATCGGCAA ACGCCTAGAT
GCAGCCTGGG CGCGGTGGTC TAGACCCTGG ACGGTAGTTG CGTGGTTATT TTTATCTATT
GGGATTACCT TAGGGAGCTG GTGGGCCTAC TACGAACTCG GCTGGGGCGG CTGGTGGTTC
TGGGATCCGG TTGAAAATGC TTCCTTTATG CCGTGGCTTG TGGGTACCGC GCTAATTCAT
TCCCTTGCCG TGACTGAAAA ACGGGATGCC TTCAAGCGCT GGACAGTACT GCTCGCCATT
TTTACTTTCT CCCTCAGCCT GCTTGGAACC TTTATAGTGC GCTCCGGGGT ACTCACCTCC
GTGCATGCCT TTGCAACGGA TCCTACGCGG GGTGTTTTTA TCCTGATATT GCTAGGACTT
GCCGTAGGCG GATCACTCCT TCTCTATGCC GTGCGGGTGC CGCAAGTACA GGATACAGGC
CGTTTTCATC TTCTTTCCCG CGAAGGGCTT CTATTGGCGA ACAATGTCGT ACTCATAGTC
GCTGCAGGCA GTGTGTTGTT AGGTACTCTT TATCCACTGG TTCTCGAAGG ATTAGGGTTA
GGTAAAATCT CGGTAGGACC ACCCTATTTT GATACCGTAT TTGTGCCTTT AATGGTCATC
CTAGCTTTCT TGCTAGGAGC TGGCCCCCTA TCCCGCTGGA AGCAGCAAAG CTTAGGGGAA
CTCGTCAAAA AATTAGGTTT TATCTTTGCC ATTAGCTTAA CAATTGGAAT TCTAGTTCCC
TATATCGTTG ATAAAGGAGA TATTTTCAGC GCAGCCGCCG GGCTGACCGT CGCTATCTGG
GTTGCCCTAA CAACTCTTCT TGGCCTCTGG AATCGACTCA GAAACCGGGG GGGAATTGTA
GCAGGAGCAC GTTCCTTATC GCGGAGCTTT ATAGGCATGT CCTTGGCCCA TACCGGCTTT
GCAGTCGCTA TTGTCGGCGT CACTTTAACC ACTATCTATG GACAGGACCG GGATGTGGGC
GTTACCGTTG GCGAGACAGC GGAATTAGGC GCCTATGAGT TCCGCCTAGA TAAAATTCAT
GAGGTTGATG GTCCCAACTA TCGGGCTATT GAGGGAACTA TATCGGTCTT CAAGGGTGAA
GATTTGATCA CGACCCTCCA CCCCCAAAAA CGCATTTACC TAGTACAAAC TTCTCCCATG
ACGGAAGCGG GTATTGATGC AGGGTTATTC CGGGATCTAT TCGTTGCCTT GGGAGAATCT
CTTGGCAGTA ATACTTGGAG TCTACGCATT CAATTTAAGC CTTTTGTACG CTGGATTTGG
CTGGGTGGAT TATTGATGGC CCTAGGCGGC GCAGTTGCCG CCAGTGATCG ACGTTACCGG
GTGAGCGTAC AAAAAATGCG CTTCAAGCTT AACCCTCCCA AACCTGAGGC TGCGGCTGAA
ATCTAA
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| Protein sequence | MTPELGQLAL ILALTLAFSQ AILPLIGAQR GIIGWMNVAR TAAYGQCFFL IVAFTCLAIS
FLNNDFSVAY VANNSNSALP PAYRFAAIWG SHEGSLLLWS LTLGLWTVAV ALFSRSIPLA
YVARVLAVMG MVNVGFLLFM LLTSNPFLRL FPAPLDGQDL NPLLQDPGLV MHPPMLYMGY
VGFSVAFSFA IAALIGKRLD AAWARWSRPW TVVAWLFLSI GITLGSWWAY YELGWGGWWF
WDPVENASFM PWLVGTALIH SLAVTEKRDA FKRWTVLLAI FTFSLSLLGT FIVRSGVLTS
VHAFATDPTR GVFILILLGL AVGGSLLLYA VRVPQVQDTG RFHLLSREGL LLANNVVLIV
AAGSVLLGTL YPLVLEGLGL GKISVGPPYF DTVFVPLMVI LAFLLGAGPL SRWKQQSLGE
LVKKLGFIFA ISLTIGILVP YIVDKGDIFS AAAGLTVAIW VALTTLLGLW NRLRNRGGIV
AGARSLSRSF IGMSLAHTGF AVAIVGVTLT TIYGQDRDVG VTVGETAELG AYEFRLDKIH
EVDGPNYRAI EGTISVFKGE DLITTLHPQK RIYLVQTSPM TEAGIDAGLF RDLFVALGES
LGSNTWSLRI QFKPFVRWIW LGGLLMALGG AVAASDRRYR VSVQKMRFKL NPPKPEAAAE
I
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