| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_0598 |
|---|
| Symbol | |
|---|
| ID | 3706830 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosococcus oceani ATCC 19707 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007484 |
|---|
| Strand | - |
|---|
| Start bp | 643808 |
|---|
| End bp | 644911 |
|---|
| Gene Length | 1104 bp |
|---|
| Protein Length | 367 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 637737106 |
|---|
| Product | TRAP dicarboxylate transporter- DctP subunit |
|---|
| Protein accession | YP_342647 |
|---|
| Protein GI | 77164122 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG4663] TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTCCGAA TGACGAAACG GGTTTCAACA TTCCTCTTAT TCTTAGTATT GTTCAGCCTT
AGCGCCTGCC GCTCCGAACC CCCAAATACC ACTATCGAAG GCCCCTCAAC CCAAATCATT
CGCTGGCGAA TGGTGACGAC CTGGCCGCCT GGCTTTCCAG TTCTCCAGGA AGGAGCAGAA
CGCTTCGCCC ACAATATCAA AACCATGAGC GGAGGACGGC TTAACATCAA AGTCTTTGCT
GGCGGGGAAT TAATTCCACC ACTGCAAACC TTTGAAGCGG TTTCCCAGGG AGCGGTGCAT
ATGGGCCATG GGTCGGCCTA TTACTGGGCT GGCCGGATTC CCGCCGCGCA ATTTTTCTCC
ACCGTCCCCT TTGGTATGAC GGTCAAGGGC ATGAATACCT GGCTTTATGA GGGTGGCGGA
CTGAAGCTGT GGCGGGAAAT TTACGCCCCC TACCATGTTA TTCCCTTTCC ACTCGGCAAT
ACCGGGGTCC AAATGGGCGG CTGGTTTAAC AAGAAAATTA AATCCACCGA AGATTTGGAA
GGTCTCAAAA TGCGTATTCC CGGTCTCGGT GGCAAGGTTT TCGCCAAGGC TGGCGGCAAT
CCTGTGCTCC TAGCAGGGGC GGAAGTCTAT ACCGCTTTGG AGCGTAATAC CATCGATGCC
ACCGAATGGA TCGCCCCCTT CCATGATTTA CGCTTGGGCT TGAACCGAGC CGCCCAGTAT
TACTATTATC CCGGTTGGCA TGAACCAGGC GCGGTGCTGG AACTGACTAT CAATAAAAAA
GCCTGGCAGT CCCTTCCTGA AGATCTCCAA GCTATTATTT CCACAGCCGC CCAAGCTGAA
AACTTGCGAA TGAGTTCGGA AATGGAAGCG AGGAACGCAC AAGCACTGAG GGAGCTGCAA
GCACAGACGC ACACCAGAAT TCTAGCTTTC CCCGATGATG TGCTCACCAA GCTACGCCAG
CTTACCCAGC AAATGCTAGC AGAACATGCG GCTAGTGACC CCCAATTTAA GCAAGTCTAT
GAAGCTTACA GTGCTTTTCG GGAAAAATTT AGTACCTGGG ATGCTATTTC AGAGCGCGCC
TATCAGCGTG CGTTGGAGAA ATAA
|
|---|
| Protein sequence | MLRMTKRVST FLLFLVLFSL SACRSEPPNT TIEGPSTQII RWRMVTTWPP GFPVLQEGAE
RFAHNIKTMS GGRLNIKVFA GGELIPPLQT FEAVSQGAVH MGHGSAYYWA GRIPAAQFFS
TVPFGMTVKG MNTWLYEGGG LKLWREIYAP YHVIPFPLGN TGVQMGGWFN KKIKSTEDLE
GLKMRIPGLG GKVFAKAGGN PVLLAGAEVY TALERNTIDA TEWIAPFHDL RLGLNRAAQY
YYYPGWHEPG AVLELTINKK AWQSLPEDLQ AIISTAAQAE NLRMSSEMEA RNAQALRELQ
AQTHTRILAF PDDVLTKLRQ LTQQMLAEHA ASDPQFKQVY EAYSAFREKF STWDAISERA
YQRALEK
|
|---|
| |