Gene Noc_0473 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNoc_0473 
Symbol 
ID3706644 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrosococcus oceani ATCC 19707 
KingdomBacteria 
Replicon accessionNC_007484 
Strand- 
Start bp508976 
End bp509680 
Gene Length705 bp 
Protein Length234 aa 
Translation table11 
GC content46% 
IMG OID637736982 
Productpeptidoglycan-binding LysM 
Protein accessionYP_342526 
Protein GI77164001 
COG category[S] Function unknown 
COG ID[COG1652] Uncharacterized protein containing LysM domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATATTTT CAAGCGCGGC CTTATTGGCG GATGAAGAGT CGCAACAACA ACGCGCCGAT 
AACCAAACCA CTCATCAGAG CCAGGAATCT GACCAAAGTT TACGTATTAC CGGCTCCTAT 
CCAAACATTT ACAAAGCCAC GGGAATAATC GGCAAGGAAG TTAAAAACAA GCAAAATAAG 
AAATTAGGCA AGATCAGCGA TTTAGTCATT GATAAATCAG GTCAAGTGAG ATATGCGGTC 
TTATCCCATG GCGAAACCCT CGGCGTGGGA GGAAAAAAGC TCGCTATTTC CTGGGATTTA 
ATTCAGGTTT CTCCTGAAGA GGAAAGTTAT ACCCTAGTCA TGGACGCAAC GCCGGAAGAA 
TTGGCGAATG CGCCTTCTTT CAATAAAGAT AATTGGCCCG CCAACGCGCA GGTGACCGAT 
ACCAGTTCCC TGAAGGAGCA GCAACAATCT TCTACCGCGG GTAGCCAATC TACTGATCAA 
CAATCAACAA ACGAAAGATC ACAATTTCAG CAACAAGACA ACGGAAGCTC GACTCCAAAA 
ACAGTCACCG TCCAAGAGGG CGATACCCTT GCCGACATTG CCCACCATGC GTACGGTGAT 
GCCAATAAGT GGCGCCTAAT TTATAACGCG AACAAGGACA AAATTAAAGA TCCCAGGGAT 
TTGCTGGTAG GGACGAAATT AACCATTCCA TCTTCTAATG AATAA
 
Protein sequence
MIFSSAALLA DEESQQQRAD NQTTHQSQES DQSLRITGSY PNIYKATGII GKEVKNKQNK 
KLGKISDLVI DKSGQVRYAV LSHGETLGVG GKKLAISWDL IQVSPEEESY TLVMDATPEE 
LANAPSFNKD NWPANAQVTD TSSLKEQQQS STAGSQSTDQ QSTNERSQFQ QQDNGSSTPK 
TVTVQEGDTL ADIAHHAYGD ANKWRLIYNA NKDKIKDPRD LLVGTKLTIP SSNE