| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_0319 |
|---|
| Symbol | |
|---|
| ID | 3706490 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosococcus oceani ATCC 19707 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007484 |
|---|
| Strand | + |
|---|
| Start bp | 344789 |
|---|
| End bp | 346774 |
|---|
| Gene Length | 1986 bp |
|---|
| Protein Length | 661 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 637736833 |
|---|
| Product | two component diguanylate cyclase |
|---|
| Protein accession | YP_342377 |
|---|
| Protein GI | 77163852 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG1639] Predicted signal transduction protein
[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGTTTG CTACTCGATT TGACGAACTC AAAGCCATGG GGGATTTACC CTCCCCTTCT
GGGGTTGCCC TCGAAATTAT GCGTCTTACC CAGCGTGAGG AAACCTCCAT CCAGGACTTG
GCCAGGGTCA TCCAGGCCGA TCCGGCCCTT GCAGGAAGGC TGCTTAAGTT TGCTAACTCT
GCCTCCGTGG GCGTCCGCCG CCCGGTGGTT GCTATCGAAG ACGCGGTAAA ATTGCTAGGT
ATTGCCGCTA TCCGTCAGTT TGTCCTGGGG ATTTCCGTCC TTTCAAATTA TAGCCATGGC
CGTTGCGAAG GCTTCAACTA CCCTGGTTTT TGGTCCCATT CTTTAGCGAC AGCACTGGCT
GCCCAGGCGC TTGCTAGCTT GGAGCGCGTT ATTGCTCCAG AGGAGGCGTT TACTTGCGGT
TTGCTTGCGT GCGTGGGGCA GTTGGGTTTA GCCACTATTT ATCCTGATGG CTATACCGCC
ATTCTACTAT CATGCAGCCG CGAAGATGAG CAAGCCTTGC TCGCCCGCGA GCAAGAGGAA
TTTGCCACCA ATCATAGGGA AATGACCATG GCGCTACTGG AAGACTGGGG TTTACCCCCT
ATCCATCTGG AAGGAATCGC GGCCAGCTAT CAGCCCGGGC CGGGAGGGTT AGAGGATGCT
TCGCGGGTCC AGCGGATAGC TCGGCAACTC TATTTTTCCG GCCATATTGC CAAGTTTTGT
GTGGCCCAAG CCGCTGAGCA GTCTAATCGG TTGGTAAATT TGGAGGAGCT TGCTTCCTGC
TTTGCATTGG ATAAAACAGG CTTGGAGCAG TTGCTTAAAA AAATTACGCA AGCGTGGACC
AAATGGGGAC GGTTATTGGC AGTGCCTACC CAGGAAGTGC CTTCTCTAGC TAACCTCAAA
GAGGAGCTGC AAGGGAAGAT GGAGCGGCAA ATCTCTGCTC CAGAGGCTAG CGATTTTACC
CCGCTTAGGA TATTGCTAGT TAGCGATGAT GAATTGAATT GCAAACGCTT TACGGGTTGG
CTTGAGAGCA TGGGACATTC GGTGAACGTT GCCCGCGAGG AGAAGGAGGG ACTCTCCCTG
ATTCTGGAAA ACCGATGCCA ACTTGTCATT TATGAGCACC GCTTACCCGG AGCGAATTCC
ATGAAATTCT GCCGGAGCTT GCGGGAAATG AAGTGCGGCC GGCAGATTTA CCTTATTGTG
TTAACTGGCA TGGTAAGCGG AGGTGAGGCC ATCCGGATCT TCGAGGCAGG GGCCGATGAT
CATATCGCTA AACCTTTTAA CTACGAGGTG TTACAAGCTC GCGTTGGAGG CGGGGAACGT
TTGATTCGCC TCAGGGAAGA GGCGGAACAG GAGCGGGAAG CGGTTCGTGG CTATCTGGCG
GATTTAGCCG TGGCTAATCG ACGTCTTGGG CAAATGGCGA TGACCGATTC ACTGACGGGG
CTTCCTAATC GCCGTTATGC GATGGAGAGA ATGGAACAAG CCTGGGCTGA ATATGAGCGC
AATCAAACTC CTTTCTCCTG TCTGGTGATG GATTTGGATT TCTTTAAACG GGTCAATGAT
CAGTATGGTC ATGAGATTGG CGATAGTGTT TTGCTAGAGA TCGCCAATGT GTTCCGCGGT
TCGGCCCGGA GCAGCGATAT AATCTGCCGT TTAGGCGGCG AGGAATTTTT GGTCGTCTGT
CCCCATACCG TGGCTACTGA AGCATTTCAG GTGGCCGAAC GATTACGACG CGCCGTGGAA
GAGCATTCCT GGACCATGCT GGATTCTACC AGTGTATTAA GTGTCAGTAT TGGTCTGGCG
GCGAGTTCAG AGGGAATGCA GCACTGGAAT GATCTTTACC GGCTGGCCGA CCAAGCGCTT
TACCAGGCAA AGCGTAATGG CCGGAACCGG GTTTGTATGG CGCCCTCTCC AAACGGGAAA
GACCAAACAG TCTCCCTCGT CTATCCCGCA CGGGTCCATG AAAACAATCC TCGGTTCATC
TTTTGA
|
|---|
| Protein sequence | MSFATRFDEL KAMGDLPSPS GVALEIMRLT QREETSIQDL ARVIQADPAL AGRLLKFANS
ASVGVRRPVV AIEDAVKLLG IAAIRQFVLG ISVLSNYSHG RCEGFNYPGF WSHSLATALA
AQALASLERV IAPEEAFTCG LLACVGQLGL ATIYPDGYTA ILLSCSREDE QALLAREQEE
FATNHREMTM ALLEDWGLPP IHLEGIAASY QPGPGGLEDA SRVQRIARQL YFSGHIAKFC
VAQAAEQSNR LVNLEELASC FALDKTGLEQ LLKKITQAWT KWGRLLAVPT QEVPSLANLK
EELQGKMERQ ISAPEASDFT PLRILLVSDD ELNCKRFTGW LESMGHSVNV AREEKEGLSL
ILENRCQLVI YEHRLPGANS MKFCRSLREM KCGRQIYLIV LTGMVSGGEA IRIFEAGADD
HIAKPFNYEV LQARVGGGER LIRLREEAEQ EREAVRGYLA DLAVANRRLG QMAMTDSLTG
LPNRRYAMER MEQAWAEYER NQTPFSCLVM DLDFFKRVND QYGHEIGDSV LLEIANVFRG
SARSSDIICR LGGEEFLVVC PHTVATEAFQ VAERLRRAVE EHSWTMLDST SVLSVSIGLA
ASSEGMQHWN DLYRLADQAL YQAKRNGRNR VCMAPSPNGK DQTVSLVYPA RVHENNPRFI
F
|
|---|
| |