| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_0173 |
|---|
| Symbol | |
|---|
| ID | 3706206 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosococcus oceani ATCC 19707 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007484 |
|---|
| Strand | + |
|---|
| Start bp | 192378 |
|---|
| End bp | 193541 |
|---|
| Gene Length | 1164 bp |
|---|
| Protein Length | 387 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 637736690 |
|---|
| Product | D-isomer specific 2-hydroxyacid dehydrogenase |
|---|
| Protein accession | YP_342236 |
|---|
| Protein GI | 77163711 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0111] Phosphoglycerate dehydrogenase and related dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTATAAGA TACTCACATT AAACAATATT TCTATCGTAG GGTTGGATCG CTTGCCTCGG
GATAAGTATG AGGTAGCCTC CGAGATTCAG CATCCAGATG CAATTCTCGT GCGATCACAT
AATATGCATG AGATGGCTAT TCCACCCACA CTCAAGGCGG TGGGGCGCGC TGGCGCTGGA
GTCAACAATA TTCCGGTAGC ACGCTTGAGC GAAGGGGGGG TGGCCGTGTT TAACGCTCCC
GGTGCCAATG CCAATGCAGT CAAGGAAGCT GTGCTAGCAG GTCTGTTGGT ATCTGCCCGT
AATATTTGTC AAGCTTGGGA GGCTGCCCGC ACTTTGACTG GCACCGATAA GGAGATTCAC
CGGGAAGTTG AGGCTCAGAA GAAGCGTTTT GTAGGCGTTG AGCTGCCTGG GCGGACCTTG
GGGGTTGTTG GCCTCGGATC TATTGGCGTT CAGGTGGCTA ATGCCGCCTT AGCGCTTGGT
ATGCGGGTGG TAGGGTATGA TCCTCAGATC ACGGTACAGC GTGCCTGGGC CCTCTCTGCA
CAGGTTGAGC AGGCGACTAA CCTGGACCAT TTATTGTCCC AGGCTGATTT TTTATCCCTG
CATGTTCCAT TGCTGGAGGC TACCCGAGGT TTGATTAACC GGGAACGGTT AAGAAATATA
AAGCCAGAGG CAAGACTTCT CAATTTTGCG CGGGCGGAAA TTGTTGACGA GGACGCTGTG
GTGGATGCTA TAGAAGAAGG TAAGATCGCG GCTTATATTT GCGACTTTCC TAGCAATCGC
TTAAAAGGGC ATCCCCAAGT GATTGCCTTG CCCCACCTTG GCGCATCTAC TTATGAGGCG
GAAGAAAATT GCGCAGTGAT GGTGGTGGAG CAGATTCGCG AGTTTCTGGA AAATGGTAAT
GTGCAAAACT CGGTGAATTT TCCAGATGCC GTGCTGCCTC GTACTGACAG CTGGCGGCTT
GCGATTGCCA ATGCCAATGT CCCTACCATG GTCGCTCAAA TTTCTACTCA CTTGGCTGAA
GCGGGCTTGA ATATTATCGA TATGCTGAAT AAGTCCCAGA ATGATTTAGC TTACACGCTC
GTGGATGTGG ATCGTCCTAT TCCTAAGTAT CTAGTGGATG GAATCAGCGC TGTTCAGGGA
ATGTTATCGG TACGGGCCTT GTGA
|
|---|
| Protein sequence | MYKILTLNNI SIVGLDRLPR DKYEVASEIQ HPDAILVRSH NMHEMAIPPT LKAVGRAGAG
VNNIPVARLS EGGVAVFNAP GANANAVKEA VLAGLLVSAR NICQAWEAAR TLTGTDKEIH
REVEAQKKRF VGVELPGRTL GVVGLGSIGV QVANAALALG MRVVGYDPQI TVQRAWALSA
QVEQATNLDH LLSQADFLSL HVPLLEATRG LINRERLRNI KPEARLLNFA RAEIVDEDAV
VDAIEEGKIA AYICDFPSNR LKGHPQVIAL PHLGASTYEA EENCAVMVVE QIREFLENGN
VQNSVNFPDA VLPRTDSWRL AIANANVPTM VAQISTHLAE AGLNIIDMLN KSQNDLAYTL
VDVDRPIPKY LVDGISAVQG MLSVRAL
|
|---|
| |