| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmul_A1177 |
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| Symbol | ligD |
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| ID | 3784346 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrosospira multiformis ATCC 25196 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007614 |
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| Strand | + |
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| Start bp | 1355243 |
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| End bp | 1357804 |
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| Gene Length | 2562 bp |
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| Protein Length | 853 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 637811262 |
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| Product | ATP-dependent DNA ligase |
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| Protein accession | YP_411872 |
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| Protein GI | 82702306 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.601183 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAAATG ATGACTCGCT TAAAACTTAC CGGGCCAAAC GTGATTTCTC GGTAACACCT
GAGCCAAGCG GCGTTGCCAG TGGCAAGACA GCCATCAAGA GTACTGCCAA GGTTTTGTCG
TTTGTTGTCC AGAAGCACTG GGCAACGCGT CTGCACTACG ACTTCAGGCT GGAACTGGAA
GGAACGATGA AGAGCTGGGC TGTTCCCAAA GGCCCCAGTT TCGACCCTAA CGACAAACGC
ATGGCGGTCC ACGTCGAAGA CCATCCCATT TCCTATAACA GTTTTGAAGG CGAGATACCC
TCAGGTCAGT ATGGCGCCGG TAAAGTCATT ATTTGGGATA AGGGAACCTG GATTCCTCTC
GAAGATCCGC ACAAGGGGTA TCGTGACGGC AAGCTGAAAT TCGAGCTGCG GGGGCTCAAG
CTGAAAGGGC ACTGGGCCTT GGTGCGCATG AGAAAGGAAG AAAACAAAAA GCAGGAACCC
TGGCTGCTGA TAAAAGAAAA GGATGAATAT GTCCGTTCAT CGCGGGAGTA TAGCGTGGTG
GACGAAATGC CGGACAGTGT GGCCGAACTT GACGTGCCAG ACGTGCCACA ACCTTCCAAA
GCTTCCGCAA CATCGGGAAG CAGCTCACCC AAAAGCAGTT CGATATTCCG CAAGGGAACG
AAAACGACCT TGCCGGACAA TGCGCGCAAG GCTGAGCTTC CGCGGACATT GACGCCGGAG
CTCGCCACGC TGGTGGACGA GCCTCCTGTG GATCCGGAAG AGTGGATTTA CGAAATCAAG
TTTGACGGGT ACCGGATGTT GAGCAGAATA GAGGGAGGAG AAGTCCGCCT CATAACCCGA
AACGGAAATG ACTGGTCTCA TAAGCTGCCG CATCTGATAA AAGCGTTGGG AAAGCTCAAA
CTGAAGTCGT CCTGGCTCGA TGGCGAAATT GCGGTGCTGG ATGAAAACGG TATTCCCGAT
TTCCAGTCGT TGCAGAATGC CTTCGACAGC GCGCATACCG AGAGCATCAT TTATTATCTC
TTCGATGTGC CCTTTTACGA GGGATATGAT TTGCGGGACG CTTCCCTTGT CGAACGCCGC
GCCTTACTGC AAAAACTGTT TGAGGCACAC GCCCCTGATG AAATACGCTT CAGCGACGTT
TTCGATGTTT CTCCAGCGGA AATTCTCGAT TCCGCTTGCC GGCTTGGACT GGAAGGAGTG
ATCGGCAAAC GTAAAACCTC GGTTTATGTC TCGCGCCGAT CCCAGGACTG GATAAAGCTC
AAATGTAAAA ACCGCCAGGA ATTCGTTATC GGCGGATATA CAGATCCCAA AGGTACGCGG
AAGGGTATTG GTTCTCTTCT GCTCGGTTAT TATGATGAAG ACCGAAAACT CAGATATGCA
GGGAATGTAG GCGCGGGATT CAGCGATAAG ACGCTGGAGG ACCTCAGGGC AAGGTTGGAC
AGAATTGCTT TGACGGATAG CCCTTTTGTG AAAGCAAATG GCCTCGATAA AAACGCGCAT
TGGGTCGAAC CCCGGCTTAT CGCGGAAGTT TCCTTCGGTG AATGGACGCG AGGAGGTCAC
ATTCGTCACT CGGTATTCCA CGGTTTGAGA TCCGACAAAA AAGCGGATGT CATTGTTCGC
GAGAAGCCCG TGCATCCCGC GGCGAAGTCG GCGCCTGCAA GCGCCATTCC AAAATCCCTG
AAAGTGACGA ACCCGGACCG AGTGATCGAT CCCTCCACCG GGTTTACAAA GGTCGATCTC
ATACGCTACT ACGCGCTGGT AGCGCCTTTG ATGCTGCCTC ACCTCGCACG GCGGCCGGTT
TCACTCGTGC GTGCTCCCGA GGGGGTATCG GGCGAACTCT TTTTTCAGAA GCATTGGGAG
AAAGAGAACA TGCCGGGGAT CGAGCAGCTT GATCCATCGC TCGACCCCGA CCATCCTCCG
CTGCTCGAAG TTTCAACCGC TGAAGGCCTT CTTTCCGCAG TGCAGATGAA CGTGATCGAG
TTTCATACGT GGAACGCCAC CAAGAATGTC ATTGGCAAGC CTGACAGAAT CGCGTTCGAC
CTGGACCCCG GCAGCGGAGT CGAATGGGCC CTCATCCAGG AGTCGGCGCA GCTCGTCAAT
GTCTTTCTCA GGGAACTGGG GTTGAAATCT TTTCTGAAAA CGAGTGGGGG CAAAGGCCTG
CACATCGTCG TGCCGATCAG GAGGCTGCGT GATTGGGATA CGGTGAAAGG TTTCTCTCAG
GCCATCGTAC AGCATCTGGC TAAAACCATT CCGACGCGTT TCACCGCAAA AAGCGGGCCT
CGCAACCGGG TGGGAAAGAT CTTCATCGAT TACCTGCGCA ATGGGTTCGG AGCCACCACC
GTATCCGCCT GGTCAGTACG CGCCCGGCCT GGATTGGGCG TTTCTGTACC GCTGGCGTGG
GAAGAGCTGT CCTCGCTGAA AAGCAGTACT CGCTGGTCCG CTTCCAATAT TCATGAACGC
CTGGATAAGG GTAATGACCC CTGGGCCGAC TACGCAGAGA CGAATCAATC GATAGTTCCT
GCCATGAAAA AGCTGGGATT CACCCCTTCA TCAAAGGCAT GA
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| Protein sequence | MTNDDSLKTY RAKRDFSVTP EPSGVASGKT AIKSTAKVLS FVVQKHWATR LHYDFRLELE
GTMKSWAVPK GPSFDPNDKR MAVHVEDHPI SYNSFEGEIP SGQYGAGKVI IWDKGTWIPL
EDPHKGYRDG KLKFELRGLK LKGHWALVRM RKEENKKQEP WLLIKEKDEY VRSSREYSVV
DEMPDSVAEL DVPDVPQPSK ASATSGSSSP KSSSIFRKGT KTTLPDNARK AELPRTLTPE
LATLVDEPPV DPEEWIYEIK FDGYRMLSRI EGGEVRLITR NGNDWSHKLP HLIKALGKLK
LKSSWLDGEI AVLDENGIPD FQSLQNAFDS AHTESIIYYL FDVPFYEGYD LRDASLVERR
ALLQKLFEAH APDEIRFSDV FDVSPAEILD SACRLGLEGV IGKRKTSVYV SRRSQDWIKL
KCKNRQEFVI GGYTDPKGTR KGIGSLLLGY YDEDRKLRYA GNVGAGFSDK TLEDLRARLD
RIALTDSPFV KANGLDKNAH WVEPRLIAEV SFGEWTRGGH IRHSVFHGLR SDKKADVIVR
EKPVHPAAKS APASAIPKSL KVTNPDRVID PSTGFTKVDL IRYYALVAPL MLPHLARRPV
SLVRAPEGVS GELFFQKHWE KENMPGIEQL DPSLDPDHPP LLEVSTAEGL LSAVQMNVIE
FHTWNATKNV IGKPDRIAFD LDPGSGVEWA LIQESAQLVN VFLRELGLKS FLKTSGGKGL
HIVVPIRRLR DWDTVKGFSQ AIVQHLAKTI PTRFTAKSGP RNRVGKIFID YLRNGFGATT
VSAWSVRARP GLGVSVPLAW EELSSLKSST RWSASNIHER LDKGNDPWAD YAETNQSIVP
AMKKLGFTPS SKA
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