| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmul_A0871 |
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| Symbol | prpD |
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| ID | 3784441 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrosospira multiformis ATCC 25196 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007614 |
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| Strand | + |
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| Start bp | 989317 |
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| End bp | 990768 |
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| Gene Length | 1452 bp |
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| Protein Length | 483 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637810953 |
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| Product | 2-methylcitrate dehydratase |
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| Protein accession | YP_411566 |
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| Protein GI | 82702000 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2079] Uncharacterized protein involved in propionate catabolism |
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| TIGRFAM ID | [TIGR02330] 2-methylcitrate dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000221374 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCATCCG CGTCCTCCCA CATTCGTCCC CAGCCTGACC AGGTTCTGGT CGACATTGCA
GATTATGTGG TGGGACGGGA TATTCAAAGC GATCTGGCTT ACGCTACCGC CCGTCACTGC
CTGATGGATT CCCTGGGGTG CGCCATGGAA GCGCTTGCGT ATCCGGCCTG CACCAAGCTG
CTTGGGCCGC TCGTGCCCGA GGCTGCCGAA TCTGAGGGCG GCGCGAGGAT TCCGGGTACC
CAGTTTCAGT TCAATCCGGT GGAAGCGGCA TTCAATATCG GCACGATGAT TCGCTGGCTC
GATTTCAACG ATACCTGGCT GGCTGCGGAA TGGGGTCATC CATCGGATAA CCTGGGGGCC
ATACTGGCTG TAGCCGACTG GCTTTCGCGC AGTGCCACGA GCGGGAGGCG GCGGCCGCTT
ATGCGCGATG TGTTGACCGC GATGATAAAG GCATACGAGA TCCAGGGTTG CTTCGCTTTG
GAAAACAGCT TCAACAGGGT GGGCCTGGAT CATGTGGTGC TGGTTAAAGT TGCCTCCACA
GCCGTCGTAA CGCATCTGCT GGGCGGCAGC CGTAAACAGA TCGTCGATGC GCTTTCCCAG
GCGTGGGTGG ACGGGCAGGC ACTTCGCACG TATCGTCATG CCCCCAACAC CGGCTCGCGC
AAATCCTGGG CTGCGGGGGA TGCCACCAGT CGTGCGGTAT GGCTTGCGCT GATCACACTC
AAGGGGGAGC CAGGCTATCC TTCAGCGCTT ACCGCGAAAA CCTGGGGGTT CTACGATGTG
CTGTTCAAGG GAGAACCTTT CAAATTCCAG AGGCCCATCG AACGATGGCA TTCCTATGTA
ATGGAGAATG TGCTGCTCAA GATTTCGTTC CCCGCCGAAT TCCACTCCCA GACAGCGGCG
GAGTGTGCGA TGCAGCTATA CCCGCACGTG AAGGACCGGA TTGCCGATAT CCGGAAAATA
ACGATCCGCA CCCACGAGGC CGCGATTCGT ATCATCGACA AGAAGGGGCC GCTCAGCAGC
CCGGCCGACC GCGACCATTG CATGCAGTAT ATCGTGGCAG TGGCCCTTAT TTTCGGCAGG
CTTACCTCTG CCGATTATGA GGATGGCGTG GCCGCCGACC CTCGCATAGA TGCGTTGCGG
GACAAGATAA TCTGTATTGA GGATCCGTGC TTCACAAAGG ATTATTACGA TCCCGAAAAA
CGCTCCATCG CAAACGGTCT CACCCTTGAA TTCAGGGACG GCAGTAAACT GGAGGAAGTG
GTGGTGGAGT ATCCCATCGG CCACAGGTTG CGTCGAAGCG AAGGCATTCC GCTACTGGAA
GAAAAATTTA GAATCAATCT TGGGCGGCGT TTCCCCGCCC AGCAGTGCGA GGCAATCATG
AATGCCTGTC ATGATCAAGG CAGGCTGGAA GCAATGCCGG TTCACGAGTT TATCGATCTG
TTTGTGATTT AG
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| Protein sequence | MSSASSHIRP QPDQVLVDIA DYVVGRDIQS DLAYATARHC LMDSLGCAME ALAYPACTKL
LGPLVPEAAE SEGGARIPGT QFQFNPVEAA FNIGTMIRWL DFNDTWLAAE WGHPSDNLGA
ILAVADWLSR SATSGRRRPL MRDVLTAMIK AYEIQGCFAL ENSFNRVGLD HVVLVKVAST
AVVTHLLGGS RKQIVDALSQ AWVDGQALRT YRHAPNTGSR KSWAAGDATS RAVWLALITL
KGEPGYPSAL TAKTWGFYDV LFKGEPFKFQ RPIERWHSYV MENVLLKISF PAEFHSQTAA
ECAMQLYPHV KDRIADIRKI TIRTHEAAIR IIDKKGPLSS PADRDHCMQY IVAVALIFGR
LTSADYEDGV AADPRIDALR DKIICIEDPC FTKDYYDPEK RSIANGLTLE FRDGSKLEEV
VVEYPIGHRL RRSEGIPLLE EKFRINLGRR FPAQQCEAIM NACHDQGRLE AMPVHEFIDL
FVI
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