| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmar_1299 |
|---|
| Symbol | |
|---|
| ID | 5774570 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosopumilus maritimus SCM1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_010085 |
|---|
| Strand | - |
|---|
| Start bp | 1188884 |
|---|
| End bp | 1190740 |
|---|
| Gene Length | 1857 bp |
|---|
| Protein Length | 618 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 30% |
|---|
| IMG OID | 641316943 |
|---|
| Product | PAS/PAC sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_001582633 |
|---|
| Protein GI | 161528807 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5000] Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.000225639 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATTG CTACTAAACT AATTTTAACT TATTTTCTAA TAAGTGCGCT TGTTATTGTT
TTAGGTATAA TTTCTCTTTA CCAGTTTTCA CAGTTGTCAG AACCAATTTC TAATGAAATT
CCATTACAAA TAAGTGAACT TAATACAAAA TCAGATCTTG ATGCACATGC TCAATTAATT
CGATATTATG ATGAGGTACT AACACAGTCA GCCAGAAATT ATGCTTTTAC TTTGGATACA
AAATGGAACC AAAGATATTT TGATACAGTT CCATTACTTG ATGATGTCAT AAATTATTCA
ATTGAATATG GAGACGAAAA AGAAAAACAG TTTTTTCAAA ATGTTCATTT AGCCAATACT
GCATTAATTG AAATGGAAAC CAAAGCCATT CTTTTTGCTG ACGAAGGTAA TCCTGAACAA
GCAATTGCAA TACTAGAAAG TAATGAATAT TGGACTCAAA AGACAATTTA TGAACAAGGA
TTAAGAGATT ATGTATACTC TCGTGGATTA GATTATGATG AAGCTTTAAT CTCATCTTCT
CTAACTTTAG AACAAGTTAC TAATGATACT GAAGACATTC TAAATTTTGG AACTAGTATT
GTACTAGTGT TTGTTATATG CGCAATTACC GTTTCTGTAT TTTTAGGATT TCTTATACCC
AAACTCATTA CAAAACCTAT TAAAAAACTT CAAAATGCTA CTGAACAAAT TATTCAAGGA
AATTTTGATA TTAAAACTGC AAGAAATTCT CAGGATGATT TAGGTCAACT ATCAAGAAAT
TTTCAAAATA TGATTGAAAC CCTGAAAGAC ACAACTAATG TAAAAGAACA GCTTACCATA
CAACAAAATC TTAGAAAAGC ACTTGAAGAA TCCTCTATAG TGAGTATAAT TGATAAAAAT
GGAAAAATCA CTTATGTTAA CGATAAATTT TGCCAAGTCT CAAAATACAC AAAAAATGAA
CTCATAGGCA AACGTCAAGA TATTTTGAGA TCTAGAAAAA TCCATCCTCC TGGATTCTAT
AAAGATTTGT GGACCACGAT TTCGAGTGGA AAAATTTGGC ATGGTGAAAT TTGTAATACT
GCTAAAGATG GAACTTTGTT TTGGAATGAT ACTACGGTTA TTCCATTCTT AGATAAGAAT
GGACAAATTT TAGAATATGT TTCAATTAGA AATAATATTA CTGAACAAAA AAATCTCACA
GATAGATTGG TTCGTGCAGA AAGATTCAGT GCTATCGGTG AATTATCTGC TAGAATTTCA
CATGATATTC GAAATCCTCT GGCAATAATA AAAAGTGAAT TTGAATTATT GAAACTTCAA
AAACAAATTG ATGAAAATGA TTTTCGTAGA ATTGATACCT CTATCAATCG AATAACACAT
CAACTAGATG ACGTTTTAGA ATATTTGCGT GATACACCTC TAGTTTACTC CAAATTCAAC
CTTACTGAAC TTGTAACTGA AGTAATTGAC ACTTTGCAAA TTCCTTCCAA TGTAAAAATC
ACCATCAAAG ACGATGAAAT TTTTATGATA GGGGATAAAG ATAAAATAAA TATCATTTTA
GTTAATTTGA TTTTTAATTC TATTCAAGCA CTTGAAGATG GAGGAGACAT TGACATCATT
TTATCTAAAA CTAATTCTGA GATTGTTATT CAAATACGAG ATTCAGGTAT TGGTATCACT
ATAAAACCAA TAGAAGCAAT ATTTGATCCG TTAACTACAT CAAAACAAAA AGGAACAGGA
TTAGGACTTG CTAGCGTAAA AAATCTTGTA GAGCAACACG GTGGTATGAT ATCTGTTAAA
AATAACCCTA CAACTTTTAC GATAAAGATT CCGCAAAAAG AGGATAAATC TGAATAA
|
|---|
| Protein sequence | MKIATKLILT YFLISALVIV LGIISLYQFS QLSEPISNEI PLQISELNTK SDLDAHAQLI
RYYDEVLTQS ARNYAFTLDT KWNQRYFDTV PLLDDVINYS IEYGDEKEKQ FFQNVHLANT
ALIEMETKAI LFADEGNPEQ AIAILESNEY WTQKTIYEQG LRDYVYSRGL DYDEALISSS
LTLEQVTNDT EDILNFGTSI VLVFVICAIT VSVFLGFLIP KLITKPIKKL QNATEQIIQG
NFDIKTARNS QDDLGQLSRN FQNMIETLKD TTNVKEQLTI QQNLRKALEE SSIVSIIDKN
GKITYVNDKF CQVSKYTKNE LIGKRQDILR SRKIHPPGFY KDLWTTISSG KIWHGEICNT
AKDGTLFWND TTVIPFLDKN GQILEYVSIR NNITEQKNLT DRLVRAERFS AIGELSARIS
HDIRNPLAII KSEFELLKLQ KQIDENDFRR IDTSINRITH QLDDVLEYLR DTPLVYSKFN
LTELVTEVID TLQIPSNVKI TIKDDEIFMI GDKDKINIIL VNLIFNSIQA LEDGGDIDII
LSKTNSEIVI QIRDSGIGIT IKPIEAIFDP LTTSKQKGTG LGLASVKNLV EQHGGMISVK
NNPTTFTIKI PQKEDKSE
|
|---|
| |