Gene Nmar_1245 details

Gene Information

• Locus tag: Nmar_1245
• ID: 5774388
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nitrosopumilus maritimus SCM1
• Kingdom: Archaea
• Replicon accession: NC_010085
• Strand: +
• Start bp: 1141481
• End bp: 1143562
• Gene Length: 2082 bp
• Protein Length: 693 aa
• Translation table: 11
• GC content: 32%
• IMG OID: 641316889
• Product: SMC domain-containing protein
• Protein accession: YP_001582579
• Protein GI: 161528753
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0419] ATPase involved in DNA repair

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 47
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGATCACAT CAATTGAATT GGGGGATTTT TTAGCACATT CAGATACAAA ACTAGAGTTT 
GATAACGGGG TAACTGTTTT TGTAGGACAT AACGGTGCAG GAAAATCAAG TATTATTGAT 
GCAATTACAT TTGCATTGTT TGGACAACAT ACAAGAAAAT CAAACAAAGG GTTAATCAAA 
CGTGGTGCAA ATCAAGGATA TTCCAAAGTA AATTTTTCAG TTAATGGAAA ATCCTTTGAA 
GCTGTAAGAA AGATTGACAG TAAAGGAACT CTTTCAGCAA AATTCACTGA AATTGTAGGA 
GATGAAAAAA TAGAGATTGC AGCAGGTGAA CGAAAACAGT TTGGGGAATC AATGACTCAA 
GAAGTTGAAA AAGCAATTGG ATTAGACTTT GAAAAATTAA AAGTTGCATC AATTGTACAA 
CAAGGAGAAT TAAATGCAAT AATCAATGCA AAACCAAAAG AGTTCAAAGA ATTGCTGAAT 
GCAATCATAG GGATTGACAA GCTTGATGTT GCTTCTGAAT CAATGAAGAC CGTAAACAAA 
GAATTTCGTG AAAGCATTAG ATCAAGAATT GGATATGATG ATACACATAT CGATATTTTG 
TCAAGAGAAT TAGAAAAATA TCAAAACGAA ATCAAGGAAT CAGAGCCCCA AAAAATTCAA 
TTAGAAAATA AACAAAAACA ATTACAGAGT GAAGTTGAAG AGTTAAGGAA AAAAGTGGAA 
ACTGAAGCCC CAAAAATTGA CAAACTCAAT CAACTTGAAG CAAGAAAAAG AGAGTTAATT 
GAATATGCAA AAGAGGCAAT TCATGAGATT CAGCAAGAAA TAAGCGAAAA TGAGCGTAAA 
ATACGTGATT GTGAGGGATG TTTTGAGTAC GCTAGCCTCA AAGAGGATTT AGAGTCCAAA 
ATTCAAAAAG TTGAGCAGGC AGTAGAGGAG ACATTAAAGA AAATACAAGA GATGAAAAGC 
CAAACTGCAT CGCTTAGAGA AAAGCAATCA CTTGCTACAA AACTCCAGCT CAAGGACAAT 
AAATGTCCAG TATGTGATTC AGATGTAGAA AAGCTAAATC CATTATTCCA AGAAGAACAC 
CTTAAACAAG AACTAAAAAC ACTTCAAGAT CAAATTATCT TAAAAGAAAA AGAGCATCAG 
ATGTACAATC AAAAAAGAAA TGAATTCTCA GAAAAACTAC AATCAGCAAG AGATGCAGAA 
GCAACCCTCA GAGCTCATTC AATTTCATCC AAAGAAGAAT TAGATAAGAT TCAAGAAGAA 
GTTAAGATAA AAAAAGAAAA CATACAAAAA ATTCCTTCAA CTAATAATTC AAATTTAATT 
GAAATATCAC AGATTGACTC TCATGCAAAG ACAATTTTTG AAAATATTTC ACAATTAGAA 
TCAGAAACAA AGGGATTTGA TGAGCAAGAA TTCATTAATC TTAAAAAAAG TGTTAACGAA 
AAACAGATGA AACTATCAAA TATTGATCAA CAAATAGGAG CAATTTTAGA AAAGATTTCA 
AAAGGAGTTG AGCAAATCAA AATTTTTGAA AATGCAATTT CAGAATTAAA AGTTGTAAAA 
GAATATGTTA CAAATCTTGA TGATATACAG AATAATGTAT TTAGCAGAGA CGGTCCAGTA 
GCTACAAGTT TGAGATCATG GGCACTGAAT GCAATTTCAG CAAAAGCATC AGAGTATCTT 
GCGTTACTTA ACACAAAAAT TCAAAGAATT CAACTTACTG AAAAGACAAG AGATATTTCA 
ATAATATGTA ATTCAAAGAG TGAGGAGTTA GATTTGGAAT CACTTAGCGG AGGAGAAAAG 
GTCAGCGTAG CATTATCATT ACGATTGGGT ATGGCAAATC TACTTGGAGG ATCAAATCTT 
AACTTGATGA TTCTAGATGA GCCTACAACC CACCTTGATG CTGAGAGAAA AAAATCACTA 
GTTAGTGTGC TGTCGCAGTT ATCAAATATT TCAAATTCAG AAACACCAAT GCAATTTATC 
ATAATTACGC ACGATGCAGA GATTTTTGAA GATTCTACAG TGGAACAAAT TTACAAATTT 
GAATCATCTG AGCAAGGTAG CAGAGTCACA TTACTCAATT GA 

 

Protein sequence

MITSIELGDF LAHSDTKLEF DNGVTVFVGH NGAGKSSIID AITFALFGQH TRKSNKGLIK 
RGANQGYSKV NFSVNGKSFE AVRKIDSKGT LSAKFTEIVG DEKIEIAAGE RKQFGESMTQ 
EVEKAIGLDF EKLKVASIVQ QGELNAIINA KPKEFKELLN AIIGIDKLDV ASESMKTVNK 
EFRESIRSRI GYDDTHIDIL SRELEKYQNE IKESEPQKIQ LENKQKQLQS EVEELRKKVE 
TEAPKIDKLN QLEARKRELI EYAKEAIHEI QQEISENERK IRDCEGCFEY ASLKEDLESK 
IQKVEQAVEE TLKKIQEMKS QTASLREKQS LATKLQLKDN KCPVCDSDVE KLNPLFQEEH 
LKQELKTLQD QIILKEKEHQ MYNQKRNEFS EKLQSARDAE ATLRAHSISS KEELDKIQEE 
VKIKKENIQK IPSTNNSNLI EISQIDSHAK TIFENISQLE SETKGFDEQE FINLKKSVNE 
KQMKLSNIDQ QIGAILEKIS KGVEQIKIFE NAISELKVVK EYVTNLDDIQ NNVFSRDGPV 
ATSLRSWALN AISAKASEYL ALLNTKIQRI QLTEKTRDIS IICNSKSEEL DLESLSGGEK 
VSVALSLRLG MANLLGGSNL NLMILDEPTT HLDAERKKSL VSVLSQLSNI SNSETPMQFI 
IITHDAEIFE DSTVEQIYKF ESSEQGSRVT LLN