| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmar_0524 |
|---|
| Symbol | |
|---|
| ID | 5773871 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosopumilus maritimus SCM1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_010085 |
|---|
| Strand | + |
|---|
| Start bp | 467886 |
|---|
| End bp | 468647 |
|---|
| Gene Length | 762 bp |
|---|
| Protein Length | 253 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 30% |
|---|
| IMG OID | 641316157 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001581858 |
|---|
| Protein GI | 161528032 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1427] Predicted periplasmic solute-binding protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 49 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGAGAT TAGGCATTGT TGATTATATC AACATGCTTC CTGTAGTATA TGGTTTAGAA
AAGAATAAGG TAAAATTTGA TGGAAAAATA ATTAGAGATG TTCCAACCAA TCTTAACTCT
AGTTTATCAC AAGGAATTAT TGATGTTGGT TTTATCTCCT CTATAGAATA TGCACGTGGT
GATTACAATT TACTTCCTTA TTGTATAAGT TCAAAAAAAA CTGTAATGAG TGTTGTATTG
GTTTCAAAAG TTCCATTTGA AGAAATTAAA TCAATTCAAC TTTCAACAGA AGCTGCTACC
TCTGTTATAC TACTTAAAAT CTTGATGCGT TATGCATACA AACAAAAAGT AAGTTATGGA
AAAAATGGAG ATGCTGAACT TCTGATAGGA GACCAAGCCT TGAAAAAATT AATCAAAAAA
CCAAAACATG TTCTTGATTT GGGTAAAGCA TGGAATACTT TCTCAAACAA AAACATGGTG
TTTGGTGTTT TGGCATCAAG AAAAAATCTT CCTCAAAAGA AAATTGAGAC TCTTTTAGAT
TCTATTCATT TATCATATCA ATGGGGTCAG GATAATCTGA ATGAAATTAT AGATTATGCT
GCCGAAAAAA CTAATCTTGA CAAAAAAATC ATCTCGCAGT ATTTTGCTGG CTTGTCTTAT
TCTATAGGAA TTAAAGAAAT ATCTAGTTTA AAGGAATTTT ACACATATTC TAAGAAAATA
AATGCAATTA CAGAAATCCC TTGTCTAGAC ATTTACAAAT AG
|
|---|
| Protein sequence | MMRLGIVDYI NMLPVVYGLE KNKVKFDGKI IRDVPTNLNS SLSQGIIDVG FISSIEYARG
DYNLLPYCIS SKKTVMSVVL VSKVPFEEIK SIQLSTEAAT SVILLKILMR YAYKQKVSYG
KNGDAELLIG DQALKKLIKK PKHVLDLGKA WNTFSNKNMV FGVLASRKNL PQKKIETLLD
SIHLSYQWGQ DNLNEIIDYA AEKTNLDKKI ISQYFAGLSY SIGIKEISSL KEFYTYSKKI
NAITEIPCLD IYK
|
|---|
| |