Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Nmar_0406 |
Symbol | |
ID | 5773471 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nitrosopumilus maritimus SCM1 |
Kingdom | Archaea |
Replicon accession | NC_010085 |
Strand | + |
Start bp | 364893 |
End bp | 365891 |
Gene Length | 999 bp |
Protein Length | 332 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | 641316035 |
Product | pseudouridylate synthase subunit TruB |
Protein accession | YP_001581740 |
Protein GI | 161527914 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0130] Pseudouridine synthase |
TIGRFAM ID | [TIGR00425] rRNA pseudouridine synthase, putative [TIGR00431] tRNA pseudouridine 55 synthase [TIGR00451] uncharacterized domain 2 |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.189117 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTCTAA AACAATTAGA GAATCTAATT GAAGTTGATC AAGATATTAC TGATGATGCA TATGGCACAT ACTATGATAA AAGAACAATA GAACAATTAC TAAACTATGG AATTATTTTA CTAGACAAAC CTCCTGGACC TACAAGTCAT GAGACAGTAG CATGGACCAA AAGAATTTTG AAATTACCAA AGATTGGACA TAGTGGAACG CTAGACCCAC AAGTTTCAGG AGTACTTCCT TTAGGGTTGG GTGAGGCAAC AAAAGCTCTA GGTGTATTGC TGTTTGGACC TAAAGAATAC CATGCACTAG GACGTGTCCA CTCGCTTCCA TCAAAAGAAA AACTACATGA GGTAATCGAA TCATTAACTG GAGAAATTTA CCAAAAACCT CCACAACGTT CCGCAGTAGT TAGACAAACA AGAACTAGAA CAATTTACGA ATTTGAAGTA TTAGAACAAA AAGAAAGACT GTTACTAACT AGAGTCCTAT GTGAGGCTGG AACATACATT AGAAAATTAT ACTATGATCT AGGTGAAATT CTAGGACCTG GTGCAACCAT GATTGAGCTT AGAAGAACTA GAGTTGATCA ATTCAGAGAA ACTGATGGAT TGGTGACCCT CCATGAACTT GCAAACGCAT TTGCTTTATG GGAAGAAAAG AAAGATGATT CTAAACTAAA GAGTATGATA CAGCCTGTAG AACATGCACT AAGTGAGTTA AAATCAGTAG TAATTCGTGA TTCTGCAATT GATGCAATGT GCCATGGTGC ACAACTAGCA ATTCCTGGAA TTTTACAAAT ATCTCCTAGT TTGAACAAAG GTGACATTGT TGGAATTTAC ACACAAAAAG GAGAAGCAGT TGCATTAGCC GAAGCAACAA TGTCTGGTCA GGAAATTCAA GATGCAGTAA AAGGATATGC ATTTGAAACA AAGAGAATTA TCATGGCTCC AAACACTTAT CCTAAAAAAT GGAGAACAAA ACCATCTTCT AAAGAATAA
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Protein sequence | MTLKQLENLI EVDQDITDDA YGTYYDKRTI EQLLNYGIIL LDKPPGPTSH ETVAWTKRIL KLPKIGHSGT LDPQVSGVLP LGLGEATKAL GVLLFGPKEY HALGRVHSLP SKEKLHEVIE SLTGEIYQKP PQRSAVVRQT RTRTIYEFEV LEQKERLLLT RVLCEAGTYI RKLYYDLGEI LGPGATMIEL RRTRVDQFRE TDGLVTLHEL ANAFALWEEK KDDSKLKSMI QPVEHALSEL KSVVIRDSAI DAMCHGAQLA IPGILQISPS LNKGDIVGIY TQKGEAVALA EATMSGQEIQ DAVKGYAFET KRIIMAPNTY PKKWRTKPSS KE
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