Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Nmar_0310 |
Symbol | |
ID | 5773547 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nitrosopumilus maritimus SCM1 |
Kingdom | Archaea |
Replicon accession | NC_010085 |
Strand | - |
Start bp | 273380 |
End bp | 274249 |
Gene Length | 870 bp |
Protein Length | 289 aa |
Translation table | 11 |
GC content | 33% |
IMG OID | 641315937 |
Product | 5-carboxymethyl-2-hydroxymuconate Delta-isomerase |
Protein accession | YP_001581644 |
Protein GI | 161527818 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0179] 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 0.324175 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAATAG CACGATTAGT ACATGAGAAT AACGAAACGT ATGGATTTGT TAAAGAAGAT AAAGTTGCAA CAAAAGACGA GATAACATAC CTGACAGGTG TTCCAATTCC ACACAATGTC AAAGATTTTC TTTTTGATGG ATGGTTTGAT GAAATTAAAA ATAAAATACA AGATTTGCCT TATGAAGAAA ATCTCTCTAA ATTCAAATTA TTAGCACCGA TTCCAAATCC CAATAAGATA ATTTGTTTAG CATTCAACTA TGTAGATCAT GCAAAAGAAC AGGGATTAAC AGCACCAGAG GATCCTGCCA TTGTCATAAA ACCAAGAACT GCCCTTAATG GAAATAATGC CAATATTGAA TGCCCAGATT TTGTTACACA GTTAGATTAT GAGGTTGAAT TAGCCTTGAT AATTGGGAAA AATTGTAAAA ATATCAGTGT CGAAGAAGCA CAAAATGTAG TTTTTGGATA CATGGTATTC AATGATGTGT CAGCCAGAGA CATTCAGTTT AAAGACAAAC AATTCACTAG AGGGAAAAGC TTTGATTCAT TTGCACCATG CGGACCATGG ATCACAACTG CAGATGAAAT TCAAGAACCG CAAAATTTGA AATTAACAAC CAAAATCAAT GGAGAACTAA GACAGAATTC TTCTACAAGC AACATGTTTA TCAAAATACC TGAAATAATT TCAAAAATCT CAAAAGTAAT GACATTAGAG AAGGGAGACA TTATTTCTAC AGGAACACCT GCAGGAGTTA TGTTAAACAA ACCAAATGCA ATCTTCTTAA AAGATGGGGA CAAGGTGGAG ATGGAGATTG AAGGTTTGGG AGTTTTAAAC AATACAATTA AAGTTATAAA ATCAATCTAG
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Protein sequence | MKIARLVHEN NETYGFVKED KVATKDEITY LTGVPIPHNV KDFLFDGWFD EIKNKIQDLP YEENLSKFKL LAPIPNPNKI ICLAFNYVDH AKEQGLTAPE DPAIVIKPRT ALNGNNANIE CPDFVTQLDY EVELALIIGK NCKNISVEEA QNVVFGYMVF NDVSARDIQF KDKQFTRGKS FDSFAPCGPW ITTADEIQEP QNLKLTTKIN GELRQNSSTS NMFIKIPEII SKISKVMTLE KGDIISTGTP AGVMLNKPNA IFLKDGDKVE MEIEGLGVLN NTIKVIKSI
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