Gene Nmar_0278 details

Gene Information

• Locus tag: Nmar_0278
• ID: 5774037
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nitrosopumilus maritimus SCM1
• Kingdom: Archaea
• Replicon accession: NC_010085
• Strand: +
• Start bp: 244747
• End bp: 245349
• Gene Length: 603 bp
• Protein Length: 200 aa
• Translation table: 11
• GC content: 38%
• IMG OID: 641315902
• Product: NADH dehydrogenase 30 kDa subunit
• Protein accession: YP_001581612
• Protein GI: 161527786
• COG category: [C] Energy production and conversion
• COG ID: [COG0852] NADH:ubiquinone oxidoreductase 27 kD subunit

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 15
• Fosmid unclonability p-value: 0.000316476
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGAGTAGTG ATTCTGAAAA ACCAGCAGCA GCAAAACCTG AAGAGAAAGC AGCTCCTCCT 
AAGCCTGCAC CAAAACCTGC AGCAAAGACT GAAGAAAAAC CTGTAGAACT TCCTGCATTT 
GAAAAAGGAA TTTCTGATAA ACTAGTTGAA AAATTTGGCG ATAAAATTGA AGTAGACTTT 
GTAAAAGAAG ACCGAGTTGG AATTAAAGCA AGTAAAGAAA GCGTTCATGA TGTGGCACAA 
TTCATTCGTG ATGACTTACA TTATGACCAT GCAGAATCTG TTTCAGGCGT AGATTATCCT 
GCAGATAATG AAATTGAGGT AGTTTATCAT CTTGGCTCTT ATACTGATTC TTCTCTTGCA 
AGGCAAGTTC TTACATTATC TACACGTGCT CCTAGAGAAT CCTCTCCAAT TCCAGGACAA 
GATTCTACAA AATTACCAAG TCTTAGAGAT GTATTCTACA GTGTGGAATT TGGTGAAAGA 
GAAGTTTTTG AAATGTTAGG TGTTTACTTT GATGGTCATC CAGATAATAG ACGATTACTT 
TTGCCTGAAG ATTGGGCAGA TTTGCCACCA CTTCGAAAGG ACTTTGCAAT AAAGGGTAGA 
TGA 

 

Protein sequence

MSSDSEKPAA AKPEEKAAPP KPAPKPAAKT EEKPVELPAF EKGISDKLVE KFGDKIEVDF 
VKEDRVGIKA SKESVHDVAQ FIRDDLHYDH AESVSGVDYP ADNEIEVVYH LGSYTDSSLA 
RQVLTLSTRA PRESSPIPGQ DSTKLPSLRD VFYSVEFGER EVFEMLGVYF DGHPDNRRLL 
LPEDWADLPP LRKDFAIKGR