| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_3802 |
|---|
| Symbol | |
|---|
| ID | 4033346 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | + |
|---|
| Start bp | 4179518 |
|---|
| End bp | 4181242 |
|---|
| Gene Length | 1725 bp |
|---|
| Protein Length | 574 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637972200 |
|---|
| Product | signal transduction histidine kinase |
|---|
| Protein accession | YP_578974 |
|---|
| Protein GI | 92119245 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3920] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.560077 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGGTCTG GCGCTGGGCG CGCTAACTCT TTCCCTGATG AGCCAGACCC TCCCTTCTCT
CTGACGACGT CACCTTATCG AACGAAGAAA TGGTCCTCGC TTAAGGCCTG GGGAATCAAA
CTCGCAAATC AGATCGGCAG CATCGTAAAG CCATATCAAG CCATGATGAT CAACTGGTTC
AAAGCTCCGA CCAACCCGCG CCGCGCTTGG CTTTATTTTC TGATGTTCGG TGGGGCTTAC
TCGGTACTCT GCATTTTCGG TGCCCTCACG GCCAACGATA AGATCTTGTC GCTGATCTGG
CCCGCCAACC CGTTTATGCT TGGTATGCTC GTGCGCTTTC CTGTATTGGC GCTTCCCCTG
GGCTGGGTCG CTTGTCTTGC CGGATTCGCG ATTGCGGTCC CGATTATCGG TTGCGGGCTT
ATGACAGGCG CGGGTCTGGC CGCATATAAT TTCGGTGTCG TGGTCATTGG CTATGTCTTG
CTATCCAGGC TCGATCGGAT TGACCAGCGT CTCCAGCGCC TGACTTCGGT TTTCTACCTG
CTCTTTGCGG TGGGCGCCGC GTCCATATTC GCCGGCATCG TTGGCTCGCT CCTGATCGGT
CCTTTATTCC ACGATCCGGT AGCCGTAAGC TCATTTCGGT ACTGGTTTTC CGTCGAGCTT
TTGAACCAGT TGGCTTTTTT GCCGATAATC CTATCCTACC CGGAAGGTCG CAAATGGGGG
CGGCAGCAAC TGCCGCAGCC GACCTTTCAC GACCAAGCGC CGATTATTGT GTTGGTGCTC
TCGGCCGTCA CGGGAATCTT CTTCGGAGGA GTGGGGGCTC TCGCTTTCCC TGTACCGGCC
CTTCTCTGGT GCGCAATTTC CTATCGCGTC TTTCTGACGG CCTTACTGAC CTTCGTATTC
TGCATATGGG GGATCATGGC GACAACGTTG GGCTACGTTG ACGCATCGCA TGTCGATCAA
TCGCTCGTGC TGTCGATCAG CATGGGGGCT GCACTGATCT CTCTGGGCCC GCTCATCATC
TCCACGACCA CTGCGACCAG AAATGAAATC CTTGACCAGC TAAGGCACCT CGCGGCCGAG
CGTGAGCTTG TGGCCAATGA ACTCGATCAT CGGATCAAGA ACCTGTTCGC GCTCGTCAAC
GGGCTGATCA GCCTATCGGT CCGTGGCAAA CCCGAGATGA AACCGCTGGC AGACACACTG
AGAAGCCGGC TCGTGGCATT ACACCATGCG CATGGTCTTG TTCGCATTCG CACCGGGAGC
GCGTCGTCGG GCCCTCCCGG GGGATTCGCT TCACTGAAGG AGCTCATCGG CACCCTGCTT
CGGCCTTATG AGGGTGCTGA AGACAAACAC GTCGTCGTCG ATGGCGATGA CGTGTTCATC
GATGGTGGGA TCGTTACGTC GCTGGCTCTC GTTTTCCACG AACTGGCGAC AAATTCGACC
AAGCATGGCG CGTTGAGTGA TCTGGACGGC GCCTTGGGCG TCCGTATCAG CCGCGACATT
GACGACCTGC ATGTCATGTG GACTGAGAGG GCCCCCGTGA CGACAGACTA TTCTGATGCT
GCGGACAGTG GCTTTGGTTC GAAGCTTCTG GATCTTACAA TCAACGAACA ATTGCAAGGA
AGCTATGTCC GCACCTGGAC AGTAGGCGGC ATGGACATCG AGATCATTCT GCCGCGCAAA
CTGTTTAGCG ACATCCCATC CAATCCCTCC ATCTTGTCGT CGTAG
|
|---|
| Protein sequence | MGSGAGRANS FPDEPDPPFS LTTSPYRTKK WSSLKAWGIK LANQIGSIVK PYQAMMINWF
KAPTNPRRAW LYFLMFGGAY SVLCIFGALT ANDKILSLIW PANPFMLGML VRFPVLALPL
GWVACLAGFA IAVPIIGCGL MTGAGLAAYN FGVVVIGYVL LSRLDRIDQR LQRLTSVFYL
LFAVGAASIF AGIVGSLLIG PLFHDPVAVS SFRYWFSVEL LNQLAFLPII LSYPEGRKWG
RQQLPQPTFH DQAPIIVLVL SAVTGIFFGG VGALAFPVPA LLWCAISYRV FLTALLTFVF
CIWGIMATTL GYVDASHVDQ SLVLSISMGA ALISLGPLII STTTATRNEI LDQLRHLAAE
RELVANELDH RIKNLFALVN GLISLSVRGK PEMKPLADTL RSRLVALHHA HGLVRIRTGS
ASSGPPGGFA SLKELIGTLL RPYEGAEDKH VVVDGDDVFI DGGIVTSLAL VFHELATNST
KHGALSDLDG ALGVRISRDI DDLHVMWTER APVTTDYSDA ADSGFGSKLL DLTINEQLQG
SYVRTWTVGG MDIEIILPRK LFSDIPSNPS ILSS
|
|---|
| |