Gene Nham_3506 details

Gene Information

• Locus tag: Nham_3506
• ID: 4029437
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nitrobacter hamburgensis X14
• Kingdom: Bacteria
• Replicon accession: NC_007964
• Strand: -
• Start bp: 3856821
• End bp: 3858737
• Gene Length: 1917 bp
• Protein Length: 638 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 637971918
• Product: ATP-dependent metalloprotease FtsH
• Protein accession: YP_578695
• Protein GI: 92118966
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0465] ATP-dependent Zn proteases
• TIGRFAM ID: [TIGR01241] ATP-dependent metalloprotease FtsH

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACGCCA ATATGCGCAA CTTCGCCCTC TGGGTCATCA TTGTCTTGCT CCTGTTGGCA 
TTGTTTACGC TGTTCCAGAA TCCCGGTCAC CAAAAGACCG CACAGGATAT TTCCTTCTCG 
CAGTTGTTGA CGGACGTTGA TCAGAACAAT GTTCGCGATG TCGTGATCCA GGGGCAGGAT 
ATTCACGGCA CCTTCACCAA CGGCTCCAGC TTCCAGACCT ACGCGCCAGC CGATCCGGGG 
CTGGTGAAAA AGCTCTATGA CGCCAAGGTG CAGATCACCG CGAAGCCGCC CGGCGAAAGC 
GTGCCGTGGT TCGTTTCGCT GCTGGTCTCG TGGTTGCCGT TCATCGCGCT GATTGGCGTG 
TGGATTTTTC TGTCGCGCCA GATGCAGGGC GGCGCCGGCA AGGCGATGGG TTTCGGCAAG 
TCGCGCGCCA AGATGCTGAC GGAGGCTCAC GGCCGGGTCA CATTCGAGGA CGTCGCGGGC 
GTCGATGAGG CCAAGCAGGA CCTGCAGGAG ATCGTTGAGT TCCTGCGCGA TCCCAGCAAA 
TTCCAGCGCC TCGGCGGACG GATTCCGCGC GGCGTGCTTC TGGTCGGCCC GCCCGGCACC 
GGCAAGACGC TGATCGCGCG CGCGGTCGCG GGCGAGGCCA ACGTGCCGTT CTTCACCATT 
TCGGGGTCGG ACTTCGTCGA GATGTTCGTC GGCGTCGGCG CGAGCCGCGT CCGCGACATG 
TTCGAGCAGG CCAAGAAGAA TTCGCCCTGC ATCATCTTCA TCGACGAAAT CGACGCGGTC 
GGCCGTCACC GCGGCGCCGG TCTCGGCGGC GGCAATGACG AGCGCGAGCA GACGCTGAAC 
CAGTTGCTGG TCGAGATGGA TGGCTTCGAG GCCAATGAGG GTGTCATCCT CATTGCCGCG 
ACCAACCGCC CCGACGTGCT CGATCCCGCG CTGCTGCGTC CCGGCCGCTT CGATCGTCAG 
GTCGTGGTGC CGAACCCCGA CGTCGTCGGC CGCGAGCAGA TTTTGAAGGT GCATGTCCGC 
AAGGTGCCGC TGGCGCCCGA CGTTAATCTC AAGACCGTTG CCCGCGGTAC GCCCGGTTTC 
TCCGGCGCCG ACCTGATGAA TCTCGTCAAC GAGGCGGCGC TGACGGCCGC CCGCCGCAAC 
AAGCGCATGG TGACGCAGGC CGAGTTCGAG GAAGCCAAGG ACAAGGTGAT GATGGGCGCC 
GAGCGCAAGT CGCTCGTCAT GACCGAGGAA GAAAAGATGC TGACGGCCTA TCACGAGGGC 
GGCCATGCCA TCGTCGGCCT CAACGTCGTC GCGACCGATC CGATCCACAA GGCGACCATC 
ATTCCGCGCG GCCGAGCGCT AGGCATGGTG ATGCAGCTCC CCGAGCGCGA CAAGCTGTCG 
ATGTCGCGGG AGCAGATGAC CTCGCGGCTC GCCATCATGA TGGGTGGGCG CGTGGCGGAG 
GAAATGATTT TCGGCCGCGA GAAGGTCACA TCGGGCGCAT CGTCGGATAT CGAACAGGCC 
ACTCGGCTTG CACGCATGAT GGTGACGCGC TGGGGTCTGT CAGAAGAACT CGGTACCGTG 
TCTTACGGCG AAAACCAGGA CGAGGTGTTC CTCGGCATGT CAGTCTCGCG CACGCAGAAT 
GCGTCGGAAG CCACGGTGCA GAAGATCGAC AAGGAAATCC GTCGCTTCGT CGAGGAAGGC 
TACAACGAGG CGACGCGTAT CTTGACCGAG AAGCGCGCCG ATCTCGAAGC GTTGGCGAAA 
GGCCTGCTTG AATTCGAGAC GCTGAGCGGC GATGAGATTA CCGATCTGCT CAACGGCAAG 
AAGCCGAACC GGGAATCGGT GCTGGAGCCG TCGGGCCCGC GCACCTCGGC GGTGCCGCCG 
GCCGGAAAAC CGCGCCCGCG TCCGGATCCA GGCCTCGAAC CACAGCCGCA GGCCTGA 

 

Protein sequence

MNANMRNFAL WVIIVLLLLA LFTLFQNPGH QKTAQDISFS QLLTDVDQNN VRDVVIQGQD 
IHGTFTNGSS FQTYAPADPG LVKKLYDAKV QITAKPPGES VPWFVSLLVS WLPFIALIGV 
WIFLSRQMQG GAGKAMGFGK SRAKMLTEAH GRVTFEDVAG VDEAKQDLQE IVEFLRDPSK 
FQRLGGRIPR GVLLVGPPGT GKTLIARAVA GEANVPFFTI SGSDFVEMFV GVGASRVRDM 
FEQAKKNSPC IIFIDEIDAV GRHRGAGLGG GNDEREQTLN QLLVEMDGFE ANEGVILIAA 
TNRPDVLDPA LLRPGRFDRQ VVVPNPDVVG REQILKVHVR KVPLAPDVNL KTVARGTPGF 
SGADLMNLVN EAALTAARRN KRMVTQAEFE EAKDKVMMGA ERKSLVMTEE EKMLTAYHEG 
GHAIVGLNVV ATDPIHKATI IPRGRALGMV MQLPERDKLS MSREQMTSRL AIMMGGRVAE 
EMIFGREKVT SGASSDIEQA TRLARMMVTR WGLSEELGTV SYGENQDEVF LGMSVSRTQN 
ASEATVQKID KEIRRFVEEG YNEATRILTE KRADLEALAK GLLEFETLSG DEITDLLNGK 
KPNRESVLEP SGPRTSAVPP AGKPRPRPDP GLEPQPQA