Gene Nham_3479 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNham_3479 
Symbol 
ID4029332 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrobacter hamburgensis X14 
KingdomBacteria 
Replicon accessionNC_007964 
Strand
Start bp3829590 
End bp3830471 
Gene Length882 bp 
Protein Length293 aa 
Translation table11 
GC content61% 
IMG OID637971890 
Product3-hydroxybutyryl-CoA dehydrogenase 
Protein accessionYP_578668 
Protein GI92118939 
COG category[I] Lipid transport and metabolism 
COG ID[COG1250] 3-hydroxyacyl-CoA dehydrogenase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGGCAA TGATCAGAAA AGTCGGCGTG ATCGGTGCGG GTCAGATGGG CAACGGTATT 
GCGCATGTGG CGGCCCTCGC CGGGCTCGAC GTGGTGCTCA ACGATCTTTC CGCCGATCGG
CTGAAGTCGG CCATGGCCAC CATCAATGGC AACCTGTCGC GTCAGGTGTC GAAGAAGATC
ATCACCGAGG ATGCCCACCA GAAAGCGCTG GCGCGGATTG GACAAACGGA CGCTCTCGAC
GGGCTTGCCG ATTGCGATCT GGTGATCGAG ACCGCCGTCG AGAAGGAGGA GGTCAAGCGC
AAGATCTTTC ACGATCTGTG CGCGGTGCTG AAGCCCGAGG CCATTATCGC CTCGAACACG
TCATCGATCT CGATTACGCG GCTTGCCGCG TCCACCGATC GCCCGGAGAA GTTCATCGGC
ATTCACTTCA TGAATCCGGT GCCGCTGATG GAACTGGTCG AGCTGATCCG TGGCATCGCG
ACCGGTGATG CGACCTTCGA GGCGGCCAAG GAATTCGTCA CCGGACTCGG CAAGCAGATC
GCCGTGTCCG AGGATTTCCC GGCCTTCATC GTCAACCGCA TTTTGCTGCC GATGATCAAC
GAGGCGATCT ACACGCTGTA CGAAGGCGTC GGCAATGTCG AGGCGATCGA TGTCGCCATG
AAGCTCGGCG CGCACCATCC GATGGGACCG CTCGAGCTCG CTGATTTCAT CGGTCTCGAC
ACCTGCCTGT CGATCATGCA GGTGCTGCAT GAAGGGCTCG CCGACTCCAA GTACCGGCCC
TGTCCGCTGC TGGTGAAGTA CGTCGAGGCC GGATGGCTCG GCCGCAAGAG CCAGCGCGGC
TTCTACGACT ATCGCGGCGA AAAACCGGTT CCGACGCGCT GA
 
Protein sequence
MAAMIRKVGV IGAGQMGNGI AHVAALAGLD VVLNDLSADR LKSAMATING NLSRQVSKKI 
ITEDAHQKAL ARIGQTDALD GLADCDLVIE TAVEKEEVKR KIFHDLCAVL KPEAIIASNT
SSISITRLAA STDRPEKFIG IHFMNPVPLM ELVELIRGIA TGDATFEAAK EFVTGLGKQI
AVSEDFPAFI VNRILLPMIN EAIYTLYEGV GNVEAIDVAM KLGAHHPMGP LELADFIGLD
TCLSIMQVLH EGLADSKYRP CPLLVKYVEA GWLGRKSQRG FYDYRGEKPV PTR