| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_3299 |
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| Symbol | |
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| ID | 4029377 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | + |
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| Start bp | 3641608 |
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| End bp | 3643137 |
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| Gene Length | 1530 bp |
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| Protein Length | 509 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637971711 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT |
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| Protein accession | YP_578493 |
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| Protein GI | 92118764 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGGGGGAG ACTGGCAGAG AGCATTGGCG TCCGGTTCTC GGGGAAGCGG ACGGGCTCAG
GCGCGGTCCC ATGCCCGTCT CCTGATCGTG TCCGGATTAC TGTTCGTCTC GCAGGCGCTG
ACAGGTTGTG CGGTCGGGCC CGATTTCAAG CCTCAAGCGC CGCCGGATAC CAGCCGCTAT
CTTTCCGACC CGGCCGGGGA TCGCGTGCCG GGGCATCCGA TTGTGCACAA CGCGGAAATC
CCTCCCCAGT GGTGGGAGTT GTTTCGTTCT CCCGCGCTGA ACCGCATCGT GGAAGATGGT
ATCGAGCACA ATTCGGACCT CGCTGCCGCG GAAGCCGCAG TCAGAGTCGC GCAGGCTAAC
GCGCTGGTTC AACGCGGCGC GCTTTTTCCC AGCGTTGCGG GAAATTTCGA TTCGACGCGT
CAGCAGGTGG CGGTCCAACT ATCGTCTCCT CTCGAGTCGG GCGCAAACAT CTTCAATCTC
CATACCGGCC AGGTGACCGT TTCTTACATC GCCGACGTGT GGGGCGGGAC ACGTCGCATG
GTCGAGTCCG CAGATGCACA GGCCGAAATG CGCGCGTTCC AGCGCGAAGG GGTCTATCTG
ACGCTGGCAA GCAACATCGC GCTCGCTGCG ATCGAGGAAG GCCGGCTGCG CGGACAGATC
GCGGCGACCC GTCGGGTCAT TGGTTTGCAG TCCGAGGTCT TGAGGCTATT GAAGCGGCAA
CAAGAGCAAG GGCAGATCGC CCTGACCGAT GTTGCCGCGC AGGAAACCGC GGTTGCGCAG
ACCAGGCTTC TGTTGCCGCC ACTGGAAAAA CAGCTCGCGC AGCAGCGTCA TCTGTTGTCG
TTTTTGACCG GACGCCTGTC GAGCGACGCT CCGGGAGAGA CTTTCAATCT CGGTTCGTTT
CGGATGCCAC GCCGTCTTCC TCTTAGTCTG CCGGCTGATC TCGTAAGACA GCGCCCCGAT
ATTCGTGCCG CTGAAGCCAA TCTCCATGCC ACCAATGCAA CGATAGGGGT CGCGATCGCC
AATCGTCTGC CGCAGATTTC CCTGACCGGT AATGTCGGTG CTGCCGCCAC CCGATTTACC
GAACTCGCTA CGCCGGGAGC GGGGCTCTGG ATGTTGGCCG GAAACGCTGC GCAGACCATT
TTCGATGCGG GAGCACTGGA AAACAAGCAG CGCGCGGCGG AAGAGGAAAC CAATCAGTCT
CTCGCTCAGT ATCGCAGCAC GGTTCTCGCA GCGTTTCAGA ATGTCGCGGA CGTATTGCGA
GCTCTTCAGG CCGGCACGCG CGCGATCAGC GCCGCCACAG ATGCGGAACG ATCTGCATCC
GAGAGCATTG CGTTGGTGCG CAAACAGGTG GATCAAGGGC AGATCAGCGT GCCGCTTCTT
CTGGCCGCAC AGCAGGCGTA TCTGCAGACA TCGCTTGCAC GCCTCGATGC CCAGGCCGCG
CAACTAGCCA ATACGGTCGC GCTGTTTCAG GCTCTTGGGG GGGGCTGGTG GAACAGGGAT
GGTCACAGCA AACCCGATCA ATCCCTTTAA
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| Protein sequence | MGGDWQRALA SGSRGSGRAQ ARSHARLLIV SGLLFVSQAL TGCAVGPDFK PQAPPDTSRY
LSDPAGDRVP GHPIVHNAEI PPQWWELFRS PALNRIVEDG IEHNSDLAAA EAAVRVAQAN
ALVQRGALFP SVAGNFDSTR QQVAVQLSSP LESGANIFNL HTGQVTVSYI ADVWGGTRRM
VESADAQAEM RAFQREGVYL TLASNIALAA IEEGRLRGQI AATRRVIGLQ SEVLRLLKRQ
QEQGQIALTD VAAQETAVAQ TRLLLPPLEK QLAQQRHLLS FLTGRLSSDA PGETFNLGSF
RMPRRLPLSL PADLVRQRPD IRAAEANLHA TNATIGVAIA NRLPQISLTG NVGAAATRFT
ELATPGAGLW MLAGNAAQTI FDAGALENKQ RAAEEETNQS LAQYRSTVLA AFQNVADVLR
ALQAGTRAIS AATDAERSAS ESIALVRKQV DQGQISVPLL LAAQQAYLQT SLARLDAQAA
QLANTVALFQ ALGGGWWNRD GHSKPDQSL
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