| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_3276 |
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| Symbol | |
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| ID | 4029470 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | - |
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| Start bp | 3609762 |
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| End bp | 3611609 |
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| Gene Length | 1848 bp |
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| Protein Length | 615 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637971688 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_578470 |
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| Protein GI | 92118741 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCGGTG TCCTTGAGCG AAGCGAAATT TCTGTTGTCG CGAGCGAGGG CCGACCGGTA
ACACCGGATG GTTCGCAAAC CGATCGAAAA GGCGCCCGTT TCGACGACAG CGTATCCTCG
CGGCTGAATT TCTTGAGCGA AGTCGTCAGG TCGCTTCCGG CAGGGGTGAC GGTTCAGGAC
GAGCAGGGAA ATTTCGTTCT CGTGAATGCC GCCGCCGCGG CGCAGTTCAA CGTGCCGGCA
CGTGACATGG TCGGAACGTC AGGCGCACCG TTTCGCTCAA GAGAATTGAA CGATCGCAGG
CATCTTGCTC GCGGGGTACT GCAATCGGGC GGGACCAGGA TATCCGAAGA ACTCATTCGG
ACGGATCATG CGACAACGGT CTATCTCACC ACGCATGAGC CCGTCCTGAT TTCGAACAGA
AAGCTTGTGC TGTCGAGTTC GGTCGATATC AGTCAACAAA AGGCCATCGA GGAGGAGCTT
TTTCGTTGTG CATACTATGA CGAGTTGACG GGTTTGCCGA CCCGGCGGGT CATCGAGCAG
CATGCCAACA GTCTGATCCG TGAGGGAGGA TATCCGGTCC GATTTGCCGT GGCATTTCTC
GATATCGACA ATTTCAAGCA CATCAACGAC TACTACGGCC ATGCATCCGG CGACGAGCTC
CTCATCGAGG TTGCCAGACG CCTGGGTGTC GGACTGCGCA CCACCGATAT GTTGTCCCGG
ATCAGCGGCG ACGAGTTCCT GCTGCTGCTG AACCCGGTCG AGAGCGACGC CGAGGTCGCC
GAATACATCG AATTCCTGTT GCAGCGGCTG AAGGCGCCGT TTTTCATTGA CGGATCGGAG
CTGTTTGCGT CCGCATCGAT CGGGGTGAGC ATTTATCCGG ATCACGGCGG CAGTTACGAG
GTGCTGCGCC AGAACGCCGA CACCGCGATG TATCGCATCA AGAACGAAAC CAAGGGCGCG
GCCGCCATTT TCGATTCCGG AATGCAGCGC GAGGCGCTGG CCCGGATGGA AATCGAACAG
TCGCTGCGGC TTGCGATTCT CGACAAACGT TTCTGTTGTG CCTTCCAGCC CAAGGTCGAC
ATCAGGACCC AGCAAATAAA AGGCATCGAG GCGCTGGTCC GGTTGCGCGA TGACGAAGGT
ATTATTCAGG CGCCTGGAAC GTTCATCGAT CTCGCAGTCG AACTCGGGCT GATCGACGAA
CTGACGCATC TGGTGCTGGC CGAGATCATG AGGTCCATCG ATCTCATCGA TGATACTTTC
GGCACTGGCG TCGGCATCAG CATCAACGTT GCCGCCAAGC AGGCCGGCAA TGTGGCATTC
ATGACATCCT TTGCACGGGC GCTCGAGAAG ACCGGCTGTC CGACGCGGTT CATCGTCGAG
GTCACGGAAG ACGCGTTCGT GGCGAAAGCC CGTTTCCAGG CGGAAATCCT CCCGATCCTG
CGAAGGCTCG GCGTCGGAAT CTCGATCGAC GACTTCGGAA GCGGGTATTC GTCCCTGTCG
GCTCTCGCCG ATATCACGGC CGATGAAATC AAGATCGATC GGTCGTTCAT CGTCGATATC
CACAAGCGCC CGCGCAGCCA GGGCATCCTG AAGGCGATCG AATCGCTCAG CGAGGCCTTG
GGAATGACGG TGATCGCGGA GGGTGTCGAG ACGTTCGAGG AACTGGCTTA TTTGCAGGCC
GCGACCCGGA TCAAATACGC GCAGGGCTTC TATTTCTCCG AGCCTGTCTT CCTCGAAGAA
CACCAACCGG GCAGCCGGGC GGTCAGCGAC AACCGCACGA GTTCGATCAA TCGGCCCGTG
CAGGAAAGTC GTCCGGCATA TTCCCGCGCC AACGGCTACG GCCGCTAG
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| Protein sequence | MSGVLERSEI SVVASEGRPV TPDGSQTDRK GARFDDSVSS RLNFLSEVVR SLPAGVTVQD
EQGNFVLVNA AAAAQFNVPA RDMVGTSGAP FRSRELNDRR HLARGVLQSG GTRISEELIR
TDHATTVYLT THEPVLISNR KLVLSSSVDI SQQKAIEEEL FRCAYYDELT GLPTRRVIEQ
HANSLIREGG YPVRFAVAFL DIDNFKHIND YYGHASGDEL LIEVARRLGV GLRTTDMLSR
ISGDEFLLLL NPVESDAEVA EYIEFLLQRL KAPFFIDGSE LFASASIGVS IYPDHGGSYE
VLRQNADTAM YRIKNETKGA AAIFDSGMQR EALARMEIEQ SLRLAILDKR FCCAFQPKVD
IRTQQIKGIE ALVRLRDDEG IIQAPGTFID LAVELGLIDE LTHLVLAEIM RSIDLIDDTF
GTGVGISINV AAKQAGNVAF MTSFARALEK TGCPTRFIVE VTEDAFVAKA RFQAEILPIL
RRLGVGISID DFGSGYSSLS ALADITADEI KIDRSFIVDI HKRPRSQGIL KAIESLSEAL
GMTVIAEGVE TFEELAYLQA ATRIKYAQGF YFSEPVFLEE HQPGSRAVSD NRTSSINRPV
QESRPAYSRA NGYGR
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