| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_3026 |
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| Symbol | |
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| ID | 4032155 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | - |
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| Start bp | 3329622 |
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| End bp | 3331625 |
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| Gene Length | 2004 bp |
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| Protein Length | 667 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637971450 |
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| Product | Type I secretion system ATPase, PrtD |
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| Protein accession | YP_578232 |
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| Protein GI | 92118503 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4618] ABC-type protease/lipase transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR01842] type I secretion system ABC transporter, PrtD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAGAAT TTCGCCGGCG GGTTTCAGTT CCCCTGCCCA ATAGGAATCG GCCCGCTCAG
ATGATCGGAC CTGCGGCCGG ATCATCTCAG GCGGTTTCAG CCGCGGCCGG GCCACGACGA
ACTTCCCAAT CGACTGAATT CGGGATGAAG TCACGCGCGC TGTTTGATGC GGTTGCGCGC
GGCGGTGCTT TTTCTCGTTT CCGCGACAGT GTGCGGGGGG CGGTTGAACG GATCAGGCCG
CTGGTCTTTT CATCTCGGCG GCGAAGACCT CTTGCAGCCT ACACCGGGCA GAAGTCCGAG
GTCGGAGATT TTCTGTCCTC CTGCCGTCAG GCGTTTTGGG GGTTGGCGGT CTTCAGCGGC
TTGAGCAACA TCCTGATGCT CACTGGCTCA TTCTTCATGC TAGAGGTGTA TGATCGCGTC
CTGCCAAGTC GCAGCGTTTC GACCCTGATC GCACTGCTTC TGCTGGCGAC CATTCTGTAT
GCTTTCCAAG GCGCGCTCGA TCTGGTTCGC ACTCGTATCA GCGGCCGCAT AGGGCGGTAT
CTTGAAGAGA CCTTAGGTTC CAGGGTCTAT GATGCCATTG TGCGCCTGCC GCTAAAAACC
CGTGGCGACG GCGATGGATT GCAGCCGCTT CGCGATATCG ATCAGGTGCG CGGCTTTCTT
TCCAGCGGCG GCCCAACTGC GCTTTTTGAT ATTCCATGGA TGCCGCTTTA TCTCGGTATC
TGCTTTTACT TCCATTTCTG GATCGGTGTG GTGGCGCTGA TTGGCGCCTG CGTGCTCGTC
GTATTCACTG TGCTGACCGA GATTCGGACC AAGGGAGCTA CAAAGGCATC CGCAGGGTTT
GCGACGTCAC GAAATGCGCT GGCATCCGAA GGGCGGCGCA ACGCAGAGGT TTTGCGAGCC
ATGGGAATGA GGCATCGCGC TGCGGAGCGC TGGCATCAAG TCAATATGAA CTATATGGCT
GCTAACGAAG CAGCAAGCGA CGCGGGGAGC GCCCTCGGCG GAATGTCGAA GGTCTTCCGC
ATGATCCTGC AGTCCGGTGT CCTCGCTGTC GGCGCCTTTC TGGTTATCCA TCAGGAAGCT
ACGGCGGGTA TCATTATCGC CAGTTCAATC CTGACCGCGC GCGCCCTTGC GCCAGTGGAG
ATGGCCATCG CGAACTGGAA GGGCTTTACG AGCGCGCGGC AAGCGGGGCG GCGGCTTGAT
CAGCTTTTGA CGCTCCTACC CAAGGAGCAG GAGCCCATGG AGCTTCCGGC GCCAGAGCGA
TCATTGAGTG TCGACCGTAT CCATGTCGTA CCGCCCAGCG CCGAGAGGCC AGTGCTGTAT
GATGTCTCTT TCGCTCTCTC GAGCGGTCAA GGATTGGGAA TTATCGGGCC GAGCGGATCT
GGCAAATCGT CTCTAGCGCG TGCTCTTGTG GGTGTTTGGC CCCAGTCGCA CGGCAAGATC
AGGATCGACA ACGCCGCGCT TGATCAATGG TCGCCTGAGG CCCTTGGCCA GCACCTCGGG
TATCTTCCGC AGGGGGTCGA GCTGTTCGAC GGGAGTATTG CCGCCAATAT CGCGCGTTTC
GATCCGAAGG CGACTGCCGC CGCCGTGTTG GGCGCCGCGC GTGCAGCTGG CGTTCACGAG
CTCATTCTTT CCTTCCCTGA TGGATACGGA ACCCGGATCG GTGAGGGCGG CACGGCGCTT
TCTGCGGGGC AGCGTCAGCG GATTGCGCTT GCGCGCGCAT TTTACGGCGA TCCGTTTCTC
GTGGTGCTTG ATGAGCCGAG TTCAAATCTC GATTCTGAGG GCGAAGCGGC TCTGACGGAG
GCAATTCTGA ATGTGCGTCG CCGCGGCGGG ATCGTCATCG TCGTGACGCA TCGGCTAAAG
TCACTTGATG GTGTCGATCA TGTGCTGGTG ATAGCCGATA GCACGGTCAA GGCCTTCGGT
GAGAGGGATG AAGTCCTCAA CAAAGTCCTA CGCAATTCGG AGCCGGTACC GATGAGAACG
GTTGCCGAAG GCGGAAGGAA GTGA
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| Protein sequence | MAEFRRRVSV PLPNRNRPAQ MIGPAAGSSQ AVSAAAGPRR TSQSTEFGMK SRALFDAVAR
GGAFSRFRDS VRGAVERIRP LVFSSRRRRP LAAYTGQKSE VGDFLSSCRQ AFWGLAVFSG
LSNILMLTGS FFMLEVYDRV LPSRSVSTLI ALLLLATILY AFQGALDLVR TRISGRIGRY
LEETLGSRVY DAIVRLPLKT RGDGDGLQPL RDIDQVRGFL SSGGPTALFD IPWMPLYLGI
CFYFHFWIGV VALIGACVLV VFTVLTEIRT KGATKASAGF ATSRNALASE GRRNAEVLRA
MGMRHRAAER WHQVNMNYMA ANEAASDAGS ALGGMSKVFR MILQSGVLAV GAFLVIHQEA
TAGIIIASSI LTARALAPVE MAIANWKGFT SARQAGRRLD QLLTLLPKEQ EPMELPAPER
SLSVDRIHVV PPSAERPVLY DVSFALSSGQ GLGIIGPSGS GKSSLARALV GVWPQSHGKI
RIDNAALDQW SPEALGQHLG YLPQGVELFD GSIAANIARF DPKATAAAVL GAARAAGVHE
LILSFPDGYG TRIGEGGTAL SAGQRQRIAL ARAFYGDPFL VVLDEPSSNL DSEGEAALTE
AILNVRRRGG IVIVVTHRLK SLDGVDHVLV IADSTVKAFG ERDEVLNKVL RNSEPVPMRT
VAEGGRK
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