Gene Nham_2809 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNham_2809 
Symbol 
ID4030646 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrobacter hamburgensis X14 
KingdomBacteria 
Replicon accessionNC_007964 
Strand
Start bp3094598 
End bp3096475 
Gene Length1878 bp 
Protein Length625 aa 
Translation table11 
GC content64% 
IMG OID637971254 
ProductABC transporter related 
Protein accessionYP_578040 
Protein GI92118311 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0411] ABC-type branched-chain amino acid transport systems, ATPase component
[COG4177] ABC-type branched-chain amino acid transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.194078 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTCAAAC AGCGCCCCCT CGTCATCGAG ACCCTCACGG CTCTCGGCCT GATCCTTGCG 
CCGTTCATCC TGCCGCATCT CGGCTTCGCG CCGAACACCA TCAACCGCAT CCTGGTGTGG
GGGCTGTTCG GCATCGGATT CGATATCCTG TTCGGCTTCA CCGGGCTGCT GTCGTTCGGC
CAGTCGGCGT TCTACGGCAC CGGCGGCTTC GTGGCGGCCT ATCTGTTGAC CCAGGCGGGA
TTCCCGCATG TGGTGACGTC GCTGTTCATC GGCATGATCG CGTCTGCGGC GGTCGGCTAT
CTGGTCGGGC TGATCGCGTT GCGCCGCACC GGCATCTATT TCGCGATGAT TACGGTGGCG
ATCGCGGAGG TATTCTTCTT CGTCGAGTTC AATCCGCTGG CCGATTGGAC CGGCGGCGAG
AACGGCCTGC CCGGCGTGCC GACGCCGCAT TTCGATCTCG GATTCGCCGA CTTCCAGTTC
AATACGAGCT GGTCGCTCTA TGTCTTCCTC GCCTTCTGGT ATTTCCTCGG CATCGTCGTG
GGGCTGCGCA TCGTGCGCTC GCCGGTCGGC ACGATCCTGC GGGCGGTTCG CGAGAACCCG
ATGCGGGCGT CGGCGGTCGG CCACAACATC CATTCCTACA AGCTGACCGC ATTCGTCATC
GCCGCCGCCT ATGCGGGCTT CGCCGGCGGT CTGCTCGGCG TGATGCAGGC GTTCATGCCG
CCCGACGCCT TCATGTTCCA CACCTCGGCC GAACTCGTCA TGATGACGGC CATCGGCGGC
ACAGGCACCT TGTTCGGCAC GCTGGTCGGA GCCGGAGTCT GGCTGTTTCT GCAGGACTTC
CTGCAGGCCG CGCTCGGTCT CGGAGCGGCG TGGAAGCTGG TGCTGGGTGT CGTGTTCGTG
CTGCTGGTGT GTTTCCTGCG GCACGGCATC ATCGGCGGCA TCGCTGATCT TTACCGCCTT
GCCGTCGGCA AGCGCGCCCA CCGGGAGCCG GTCGCGGCGC CGGCCAGCGC TTTGACCGCG
GAGGAAGAAC AAGAGGTTGC GGAGGCCGAG CTCGCGAAGG AGCCGGATCC GTTTCCGATG
GCCCCGGTGC ATCGCGCGAG CGACGGCTAT TCCGGCCCGA TCCTGCAGGC GACCGGCCTG
ACCAAGCGTT ACGGCGGTCT CCTCGCCAAT AGCAAGATCG ATTTCACCGT CAACCATGGC
GAGTTGCGCG GCATCATCGG CCCAAACGGC GCCGGCAAGT CGACGTTTTT CAAGATGTTG
ACCTGCGAAG TCGCGCCGAC GTCGGGCAAG ATCGTGTTCG AGGGGCTCGA TATCACCGGG
ATGAACGTCA CCGACGTCTG CCAGCTCGGT CTGACTAAAA GCTATCAGGT CAATCAGTTG
TTCTCCGCAC TGACCGTGCG CGAGAATCTG ACCATCGCGG CGCTCTCGGA ATTGCGCGGC
AAGTTCCGCC TCGACATATT CCGCAGTCTC GGCAACATTC CGGGATTATC CGAGCAGGTC
CAACGCACGC TGGAACTGGT CAATCTGACG ACGCGGCCGG ACACGCCGGT GTCCGAACTC
GCCTATGGCG AAAAGCGCCG GCTGGAAATC GGGCTGGCGC TGGCCACCTC GCCAAGCCTG
CTGCTGCTCG ACGAGCCGCT CGCCGGCATG AGCCCGCGTG AGCGCGTGGA GACGGTCAAG
CTGCTGAAGT CCATCAGCAA GGGCCGCACC ATGATCATCA TCGATCACGA CATGGATGCG
CTGTTCGAAC TTGCCGAGCG CGTCACGGTG CTGCAGGAAG GCCGGGTGCT GGTCGAGGGA
ACGCCGGACG AAATCAAGAA CAACGCTGCG GTCCAGGAGG CCTATCTCGG AGGTGTAAAC
GGAGTGCTCA CCGCATGA
 
Protein sequence
MLKQRPLVIE TLTALGLILA PFILPHLGFA PNTINRILVW GLFGIGFDIL FGFTGLLSFG 
QSAFYGTGGF VAAYLLTQAG FPHVVTSLFI GMIASAAVGY LVGLIALRRT GIYFAMITVA
IAEVFFFVEF NPLADWTGGE NGLPGVPTPH FDLGFADFQF NTSWSLYVFL AFWYFLGIVV
GLRIVRSPVG TILRAVRENP MRASAVGHNI HSYKLTAFVI AAAYAGFAGG LLGVMQAFMP
PDAFMFHTSA ELVMMTAIGG TGTLFGTLVG AGVWLFLQDF LQAALGLGAA WKLVLGVVFV
LLVCFLRHGI IGGIADLYRL AVGKRAHREP VAAPASALTA EEEQEVAEAE LAKEPDPFPM
APVHRASDGY SGPILQATGL TKRYGGLLAN SKIDFTVNHG ELRGIIGPNG AGKSTFFKML
TCEVAPTSGK IVFEGLDITG MNVTDVCQLG LTKSYQVNQL FSALTVRENL TIAALSELRG
KFRLDIFRSL GNIPGLSEQV QRTLELVNLT TRPDTPVSEL AYGEKRRLEI GLALATSPSL
LLLDEPLAGM SPRERVETVK LLKSISKGRT MIIIDHDMDA LFELAERVTV LQEGRVLVEG
TPDEIKNNAA VQEAYLGGVN GVLTA