| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_2682 |
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| Symbol | |
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| ID | 4032380 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | - |
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| Start bp | 2949049 |
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| End bp | 2951013 |
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| Gene Length | 1965 bp |
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| Protein Length | 654 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637971134 |
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| Product | squalene cyclase |
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| Protein accession | YP_577921 |
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| Protein GI | 92118192 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1657] Squalene cyclase |
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| TIGRFAM ID | [TIGR01507] squalene-hopene cyclase
[TIGR01787] squalene/oxidosqualene cyclases |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.145002 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACTCCG TAAACGCCAC AGTCGCGCCG ATCGACGATG CCGCTCTCGG GGGCAGCATC
GGCGCCGCGA CGCGCGGGCT TCTGGACCTC AAGCAGCCGG ACGGTCATTT CGTGTTCGAG
CTGGAGGCCG ACGCGACCAT CCCGTCCGAA TACGTCCTCT TGCGGCACTA TCTCGGCGAG
CCGGTCGATG CGGCGCTGGA AGCCAAGATC GCGGTCTACC TCCGTCGCAT CCAGGGCGCA
CATGGCGGCT GGCCGCTGGT GCATGACGGC CCGTTCGACA TGAGCGCCAG CGTGAAAGCC
TACTTCGCGC TGAAGATGAT CGGCGATTCC ATCGACGCGC CGCACATGGC GCGCGCGCGC
GAGGCAATCC TCTCCCGCGG CGGTGCGGCC AACGTCAACG TCTTCACGCG CTTCCTGCTC
TCGCTCTTCG AAGTGCTGAC ATGGCGCAGC GCCCCCGTGC TGCCGATCGA GATCATGCTG
CTGCCGATGT GGTCGCCGTT CCATATCAAC AAGATTTCCT ACTGGGCTCG CACCACCATG
GTGCCGCTGA TGGTGTTGGC GGCGCTGAAG CCGCGCGCGC GCAATCCGCG CGGAATCGGC
ATCCGCGAAT TGTTTCTTCA GGATCCGGCC ACGGTCGGCA CGCCGAAGAG GGCTCCGCAT
CAAAGCCCGG CCTGGTTCAC GCTGTTCAAC AGCCTCGACT GGATCTTGCG CAAGATCGAA
CCGCTGTTTC CCAAACGGCT GCGTGCGCGC GCGATAGAAA AGGCGATCGC GTTCGTCGAG
GAGCGCCTCA ACGGCGAGGA CGGTCTCGGC GCGATCTTTC CGCCGATGGT CAATACGGTG
ATGATGTATG ACGCGCTGGG CTTTCCGCCC GAGCACCCGC CGCGCGCAGT GGCACGGCGC
GGAATCGACA AGCTTCTGGT GATCGGCAAG GATGAGGCCT ATTGCCAGCC CTGCGTGTCG
CCGATCTGGG ATACCGCGCT GACCTGTCAT GCGCTGCTCG AAGCTGGCGG ACCCGAGGCG
CTGAGTGGCG CGGGGAAGAG CCTCGACTGG CTGCTCCCGA AGCAGGAGCT CGTTCTCAAG
GGCGACTGGG CCGTGAAACG TCCGGACGTG CGGCCCGGCG GCTGGGCGTT CCAGTACGCC
AACGCCCACT ATCCCGATCT CGATGACACC GCTGTCGTGG TCATGGCGAT GGACCGGGTA
CGCCGCAACG ATCGCAGCGA TAAATACAAC GAGGCGATCG CGCGCGGCCG CGAGTGGATC
GAGGGCATGC AGAGCCGGGA CGGCGGCTTT GCGGCGTTCG ACGCCGACAA TCTTGAATAC
TATCTCAACA ACATCCCGTT CTCGGACCAT GCGGCGTTGC TCGATCCGCC GACCGAGGAT
GTCACGGCGC GATGCGTCTC GATGCTGGCG CAACTCGGCG AGACCGTTCG CAGCAGCCCG
TCCATGGCGG CCGGTGTGGA CTATCTGCGC CGGACCCAGC TCAAGGAGGG GTCGTGGTAC
GGCCGCTGGG GTCTCAACTA CATCTACGGC ACCTGGTCGG TGGTCTGTGC GCTCAATGCC
GCCGGGGTCG ATCACCAGGA TCCGGCGATG CGCAAGGCGG TGGACTGGCT GGTGTCGATC
CAGAATGCCG ATGGCGGCTG GGGTGAGGAC GCTGTCAGCT ACCGGCTCGA CTATAAGGGG
TTCGAGGGGG CGCCGACCAC GGCCTCGCAA ACGGCCTGGG CTTTGCTTGC CTTGATGGCC
GCGGGCGAGG TCGAAAATCC GGCGGTGGCC CGGGGGATGA AGTACCTAAT AGACACACAG
ACCAAAAAAG GGCTGTGGGA CGAGCAACGC TTCACCGCCA CGGGGTTTCC ACGGGTGTTT
TACCTGCGGT ATCATGGCTA CTCCAGATTC TTCCCGCTCT GGGCGCTGGC GCGGTACCGG
AATTTGAGAA GCACCAACAG CAAGGTGGTA GGGGTCGGGA TGTGA
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| Protein sequence | MNSVNATVAP IDDAALGGSI GAATRGLLDL KQPDGHFVFE LEADATIPSE YVLLRHYLGE
PVDAALEAKI AVYLRRIQGA HGGWPLVHDG PFDMSASVKA YFALKMIGDS IDAPHMARAR
EAILSRGGAA NVNVFTRFLL SLFEVLTWRS APVLPIEIML LPMWSPFHIN KISYWARTTM
VPLMVLAALK PRARNPRGIG IRELFLQDPA TVGTPKRAPH QSPAWFTLFN SLDWILRKIE
PLFPKRLRAR AIEKAIAFVE ERLNGEDGLG AIFPPMVNTV MMYDALGFPP EHPPRAVARR
GIDKLLVIGK DEAYCQPCVS PIWDTALTCH ALLEAGGPEA LSGAGKSLDW LLPKQELVLK
GDWAVKRPDV RPGGWAFQYA NAHYPDLDDT AVVVMAMDRV RRNDRSDKYN EAIARGREWI
EGMQSRDGGF AAFDADNLEY YLNNIPFSDH AALLDPPTED VTARCVSMLA QLGETVRSSP
SMAAGVDYLR RTQLKEGSWY GRWGLNYIYG TWSVVCALNA AGVDHQDPAM RKAVDWLVSI
QNADGGWGED AVSYRLDYKG FEGAPTTASQ TAWALLALMA AGEVENPAVA RGMKYLIDTQ
TKKGLWDEQR FTATGFPRVF YLRYHGYSRF FPLWALARYR NLRSTNSKVV GVGM
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