| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_2196 |
|---|
| Symbol | |
|---|
| ID | 4032033 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | - |
|---|
| Start bp | 2443239 |
|---|
| End bp | 2444519 |
|---|
| Gene Length | 1281 bp |
|---|
| Protein Length | 426 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637970653 |
|---|
| Product | LolC/E family lipoprotein releasing system, transmembrane protein |
|---|
| Protein accession | YP_577448 |
|---|
| Protein GI | 92117719 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
|---|
| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00714902 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATGAGA CCATGAACGA GCCGCTCCGG ACCAAGCCCT TTGCCGCCTT CGAATGGATG
CTGTCGGGGC GCTATTTGCG GGCGCGGCGC AAGGAAGGTT TCATCTCGGT CATTGCCGGC
TTTTCGTTCC TGGGCATCAT GCTCGGCGTC GCCACGTTGA TCATCGTGAT GGCCGTCATG
AACGGATTTC GCACGGAGCT GCTCAGCAAG ATCCTTGGCC TGAACGGGCA TCTGCTGGTT
CAGCCGCTGG AATCGCCTCT CACCGACTGG AAGGATGTTG CCGACCGAAT CAGTCAGGTG
CCGGGGATAC GGCTCGCAGC GCCTGTCGTC GACGGTCAGG CGCTGGCGTC TTCGCCGTAT
AATGCCGCCG GCGTTTTCGT CCGGGGTATC AGGGCCGCTG ACCTCAACAA TCTCACCTCC
ATCGCCAAGA ACATCAAACA GGGTACGCTC GACGGGTTTG ACGACGGGCA GGGCGTGGCC
ATCGGCCGGC GGCTTGCCGA TCAGCTCTCG CTGCACGCAG GCGACAGCAT CACGCTGGTC
GCGCCGCGCG GGGCCGTGAC CCCCATGGGC ACGACTCCGC GCATCAAGCC GTACAAGGTC
GCGGCGGTGT TCGAGATCGG GATGTCCGAA TACGATTCGA CCTTCGTGTT CATGCCGCTG
GCCGAGGCGC AGGCCTATTT CAATCGCGCT AACGATGTCA CCGCGATCGA GATCTATACC
GACAATCCGG ACAAGATCGA CGAATTCCGC AAGTCGGTGA CGGAAGCCGC GGGCCGGCCG
GTGTTTCTGG TCGACTGGCG GCAGCGGAAT TCGACGTTTT TCAATGCGCT CCAGGTCGAG
CGCAATGTGA TGTTTCTGAT CCTGACGCTG ATTGTCCTCG TCGCGGCGCT GAATATCGTT
TCGGGACTGA TCATGCTGGT CAAGGACAAG GGCAGCGATA TCGCCATCCT GCGCACCATG
GGCGCGTCGC AGGGATCGAT CATGCGTATC TTCCTGATTA CCGGCGCGGC GATCGGTGTC
GTCGGCACGC TCACCGGCTT TGTCGTGGGG CTGGTGATCT GTCTCAACAT CGAGTCGATC
CGGGAGTTCC TGTCGTGGCT CACCAGCACC GAACTGTTCT CGCCGGAGCT TTACTTCCTG
TCCAAACTGC CGGCTGAGAT CGATGTTCGG GAGACCGGCG CCGTTGTGAT CATGGCGCTG
ACGCTGTCGT TTCTCGCGAC TCTTTATCCA TCGTGGCGTG CCGCGCGCCT CGATCCCGTC
GACGCCCTGC GGTACGAGTG A
|
|---|
| Protein sequence | MDETMNEPLR TKPFAAFEWM LSGRYLRARR KEGFISVIAG FSFLGIMLGV ATLIIVMAVM
NGFRTELLSK ILGLNGHLLV QPLESPLTDW KDVADRISQV PGIRLAAPVV DGQALASSPY
NAAGVFVRGI RAADLNNLTS IAKNIKQGTL DGFDDGQGVA IGRRLADQLS LHAGDSITLV
APRGAVTPMG TTPRIKPYKV AAVFEIGMSE YDSTFVFMPL AEAQAYFNRA NDVTAIEIYT
DNPDKIDEFR KSVTEAAGRP VFLVDWRQRN STFFNALQVE RNVMFLILTL IVLVAALNIV
SGLIMLVKDK GSDIAILRTM GASQGSIMRI FLITGAAIGV VGTLTGFVVG LVICLNIESI
REFLSWLTST ELFSPELYFL SKLPAEIDVR ETGAVVIMAL TLSFLATLYP SWRAARLDPV
DALRYE
|
|---|
| |