| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_1516 |
|---|
| Symbol | |
|---|
| ID | 4032415 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | + |
|---|
| Start bp | 1723615 |
|---|
| End bp | 1724085 |
|---|
| Gene Length | 471 bp |
|---|
| Protein Length | 156 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637969991 |
|---|
| Product | biopolymer transport protein ExbD/TolR |
|---|
| Protein accession | YP_576798 |
|---|
| Protein GI | 92117069 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0848] Biopolymer transport protein |
|---|
| TIGRFAM ID | [TIGR02803] TonB system transport protein ExbD, group 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.890263 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGCGCGT CGATTGCAGA AGGCGGTTTT GACGACGACG AGGAATACGC CGAAGCGCAT
GAAATCAACG TCACGCCGTT CATTGACGTT ATTCTTGTCC TCCTGATCAT CTTCATGGTG
GCAGCGCCGC TGTCGACCGT CGATCTGCCG GTCAATCTGC CGACGTCGAG TGCGACGCCG
CAAAAGAAGC CGGACAAGCC GACCTATGTC AGCATCAAGG CCGATCTTGC GATTGCGATC
GGCGAAAACC TGGTCAAGCG CGTCGATCTG GTCCGGACGC TCGACACCAC GCCGAACATG
ACCAAGGACA GCTTCATCTT TCTACGCGCG GATCGCGCTG TGCCTTACGG CGACCTGATG
GACGTGCTGG AGATCCTGCA CGCAGGCGGC TACGCGAAAA TCAAGCTGGT GGCGCTCGAG
GGCGTTCCGG ACGCCCAGTC CGTTCCCGCC ACAGACAACG CAAGGCTTTG A
|
|---|
| Protein sequence | MGASIAEGGF DDDEEYAEAH EINVTPFIDV ILVLLIIFMV AAPLSTVDLP VNLPTSSATP
QKKPDKPTYV SIKADLAIAI GENLVKRVDL VRTLDTTPNM TKDSFIFLRA DRAVPYGDLM
DVLEILHAGG YAKIKLVALE GVPDAQSVPA TDNARL
|
|---|
| |