Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Nham_1054 |
Symbol | |
ID | 4031660 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nitrobacter hamburgensis X14 |
Kingdom | Bacteria |
Replicon accession | NC_007964 |
Strand | + |
Start bp | 1181525 |
End bp | 1183729 |
Gene Length | 2205 bp |
Protein Length | 734 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637969552 |
Product | lipopolysaccharide biosynthesis protein |
Protein accession | YP_576362 |
Protein GI | 92116633 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3754] Lipopolysaccharide biosynthesis protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.393158 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATAAGA TTGCGGAGCG CGGCGTCAGG ACTGCGAAGG ACACGCAACC CGTTGCCAGT CCTATTCCAC AAGAGGAAAA TCTTCAAAAC TCGTTCCTGG ATCCTGGTCT AGGAGATCTG GAGTCGGGCG CGCGCCTGCG TGGTGCGATA CTGGAGTATT CCGGCCGGGA AATCTCCGGC TGGATCGTCG ATGCGCGCTC GCCCAAGGCA TCGGTTTCTC TTTCTCTCTG TGTCGGGTCC CATGCGATCG AAGAGACGAG AACGGACCGC GCGGCTCCTA CCGGAATTGG CTCTCGCAAG GCATTCGGTC GCCCCGGGTT TCGCATCGAT CTGGCGAACC CGGCGGCGCG TCGACGCCTG GCGCGCGCGC TCAGAAACAC ATTGGCGGAT CCGGGCCAGA CGCAGATCTA CCTCCGCGTC AGCCTGGACG ATGGAGAATT TTTTGAGATT CCGCTGTTTG ACAACATCGC GTCCGATGAA CTGGTTGTCG CACTGGGATT TTCGAGCGCC GATTACACTG ATCTGCTGAT TCCGAATAAT AACAGGGTCG TCACGTCTGC TCCGGATCCG GCCGGGAAGC AGGTGCGCCA TGTTTGTTTC TATCTCCCCC AGTTTCATGC GTTCGCGGAG AACGACCGAT GGTGGGGACC CGGCTTTACC GAATGGACCA ACATTTCGCG CATGCGTCCT CAGTTCCCGG CTCATCAATC TCCCTGGTTG CCGGCGGACC TCGGCTTTTA TGATGTGAGA TTGACGGAGA CCCGTCGGCA ACAGGCCGAG TTGGCCCGCC GCTACGGCAT CCACGGCTTC TGCTACTACG TGTACTGGTT CCAGGGGCGC AGACTTCTCG AACGACCGTT GGAACTCCTT CTGGAGGATG GAGAACCGGA TCTGCCCTTC TGCATTTGCT GGGCGAATGA GAACTGGTCA CGCCGCTGGG ACGGCTCGGA TGCCGAACTC CTGCTCGGAC AAAATCATTC GCTCGATGAC GATGTTCGCT TTATCGACGA TATGGCACAG CTTCTGCTCG ACGAACGTTA CATCACGGTG GACGGCCGCA AGATCATTCT CATTTACCGG CCGTCGCTAT TGCCGGACAG GCAGCGCCTG TTCGAGATCT GGCGCGCAAG AGCAAGGGAA CTGGGAATCG GAGAGATTCT GATCTGCAAC GCCATGACGT TCGGAGAGTT TGATCCGCGT GACCTTAACT GCGATGCCGC AGTTGAGTTT CCTCCGCATA CCGTCTCGAC GATGGAGCAG CCGCTCTCGG AGCTGGGCGC CCCCGCGAGC TTTACGGGTA AGGTTTACGA TTATGTCGAT GCCGTGCGCT CGTCGTTGGG CAAGACATAC GATTTTCCCT ATTTCCCGGC CGTTATGCCG CGCTGGGACA ATACGCCCCG CAAGGGTTCA CGGGGGCACA TCTTCAACAG GTCGAGTCCG GAGGCGTTCG AAGTATGGCT GCGGGATGCC GCCAACCGAG CGAGAAAAAG CGCATTTGCG GAGCCGATCG TTTTCATCAA CTCCTGGAAC GAATGGGCCG AAGGGGCCCA CCTGGAGCCG GACTCGCGGT ATGGACGAGC ATTTCTGGAG GCGGTGAGAA GGGTGGCATC GTCCGAGCCG ATCTCGACCC AGGTCCGTTC GAATCCGGAT TTGCTGGACT GCCTGAGCCG GCAGGAGCTG GAGCGAGCGG TGAAGGAAGC GGCCACTCAC GTTCAACTGC TCGCGACCCT TCATCGATCG GAGATGGCCT ATTCGGGCTT GCAGCATACG CGAAACGGGA TTCCCGCGGA GGCTCAAGGT GCGTCCGAGA ATCCGCCTGA ATCACTGCTC GTCATTGAGA ACGTCAATTC TCAAACGAGC GAACGGGTGG TGGTCGATCC GCGATCGATC GTCCTCATAC GAGGGTGGGT CTGTGCAGGT GAGGCTTTCG AGGCGAGCAA GCACAGGACG GCTTTCCTGA TCCTCATCTC CGCGGACCCA GAAAAGCAGG ATCAGAACGG TTACTGCCTG GTCGTGGACT GGCACGAGCG CTTTGATGTC AAGGAGTATA TGAGAGCGAA AAGCAGGGAT TGCTATTTCG GCTTCCAGCT CTCCTTTTTC GTCCACGATA TTCCCGACGG AGAGTACCAG ATCGCGGTTC TGGAGGTGGG CGAGGGAAGC CGTGCGCTCA TCAGGACGAA TCACTCGATC ATCGTTCGAC GTTGA
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Protein sequence | MNKIAERGVR TAKDTQPVAS PIPQEENLQN SFLDPGLGDL ESGARLRGAI LEYSGREISG WIVDARSPKA SVSLSLCVGS HAIEETRTDR AAPTGIGSRK AFGRPGFRID LANPAARRRL ARALRNTLAD PGQTQIYLRV SLDDGEFFEI PLFDNIASDE LVVALGFSSA DYTDLLIPNN NRVVTSAPDP AGKQVRHVCF YLPQFHAFAE NDRWWGPGFT EWTNISRMRP QFPAHQSPWL PADLGFYDVR LTETRRQQAE LARRYGIHGF CYYVYWFQGR RLLERPLELL LEDGEPDLPF CICWANENWS RRWDGSDAEL LLGQNHSLDD DVRFIDDMAQ LLLDERYITV DGRKIILIYR PSLLPDRQRL FEIWRARARE LGIGEILICN AMTFGEFDPR DLNCDAAVEF PPHTVSTMEQ PLSELGAPAS FTGKVYDYVD AVRSSLGKTY DFPYFPAVMP RWDNTPRKGS RGHIFNRSSP EAFEVWLRDA ANRARKSAFA EPIVFINSWN EWAEGAHLEP DSRYGRAFLE AVRRVASSEP ISTQVRSNPD LLDCLSRQEL ERAVKEAATH VQLLATLHRS EMAYSGLQHT RNGIPAEAQG ASENPPESLL VIENVNSQTS ERVVVDPRSI VLIRGWVCAG EAFEASKHRT AFLILISADP EKQDQNGYCL VVDWHERFDV KEYMRAKSRD CYFGFQLSFF VHDIPDGEYQ IAVLEVGEGS RALIRTNHSI IVRR
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