| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_0960 |
|---|
| Symbol | |
|---|
| ID | 4031798 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | - |
|---|
| Start bp | 1063074 |
|---|
| End bp | 1065662 |
|---|
| Gene Length | 2589 bp |
|---|
| Protein Length | 862 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637969463 |
|---|
| Product | peptidase C14, caspase catalytic subunit p20 |
|---|
| Protein accession | YP_576273 |
|---|
| Protein GI | 92116544 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4249] Uncharacterized protein containing caspase domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.355322 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTGTCT TGGCCTGCAT TGCGCTCGCC CTTATCGCAC TCACGTCGTT ATCTCCAACC
AACGCGCAAC AAGCTGAAAA GCGCGTTGCT TTGGTGATCG GTAACGCCGC CTATCAGTCA
GAAGCATTGC CGACCACTGC GAACGATGCT GGTCTCATCG CCCAGACACT GCAGGCTGCC
GGATTCGATG TGGTCGGCGC GCGCGATCTC GACCAGGACA CGCTGCGCCG TACGTTCCGT
GAGTTTCTCG ACAAGGTCAG CGCGTCCGGA CCAGACACCG TCGCCTTCAT CTATCTCGGT
GGATATGGCG TACAACTCGA AGGCGAGAAT TACTTCGTAC CGGTCGATGC GAAGCTCGCG
CGCGATACCG ATGTGCCGCT CGAAACGCTC CGGCTATCCG ACTATATCCG GCCGCTGGCG
GCGCTGAAAA TCAAAGCGGG TATTGTCGTC CTCGATGCCG CGCGCGCCAA TCCGTTCTCC
GGATCGGACC AGCCGTTGGC CAGCGGCCTC GCACTGGTGG AGCCCGAACC GCACATGTTG
ATCGCCTTCA ATGCGGCTCC CGGCACGGCG GCGCCGCAGG AGAAGGGGCC GTACGGCGCT
TATGCGCAGG CGCTCGCCGA AATGATCCGC ACCGGCGGCC TGCCGCTCGC CGATGTGTTC
GACCGGACCC GTCTGCGCGT CAATGAAATG ACCAAAGGCG GCGAAGTGCC CTGGAGCGCG
TCGAAGATCG AGGCGCCTTT CATGTTCTTC GACCGCGCGC CTGACGCTCC ACCACCGACC
GCGTCAAATG AACAAATTGC CACGATGCGC GCGCGACCAA TTCGCGATCT CGACGCGCAG
GATGCATATG TCGCCGCGCT GGAACGCGAT ACGCTGCGAG GGTATCTCGA TTTTCTCGCC
GCCTATCCGA ACGATCCGAT GGCGAGGCGT GTCCGCGCCA TTGTCGCCGC GCGCCGGGAA
GCGATCACCT GGCGGTACAC ACGTAGCGTC GACACGCCAC AGGCCTACTG GTCGTATCTG
CGCCGCTATC CGCGCGGACC GCACGTCGCC GACGCCCATC GCCGCCTCGC ATATCTCGCC
GCTGCGTTCG AGCCGCCCCC GACTTTCACT GCTATCAGCT ATGACGTCCC GCCACCGCCC
GAAGACGAGA TCGTGTATTT CCGTCAGCCG GTGCTGGTCT TTGACGATCC GGACTATGGA
TTCGCGCCAC CGCCGCCACC GCCGGTGTTC TTCCTGCCAC CGCCACCACC GGATTTCGTC
GTGCTTGCAC CACCGCCACC CGTATTTGCG GCGTTCGTGC TGCCGGTCCC CGATTATGTG
CCGATGCCGG CATATTACAG CCCGCCGCCC TATGTGGCGC CGCCGCCGCA GAACGTCATC
TATAACAACA TCCACAATAC AGTGGTGATC AACACCACCA CCAACATGGT CACGATCACC
AGGCCAGGCG GTCAGCCGCA GACGGTGACG CCGGCGCAGG CGCTTGCGTC GCAACCTGTA
TCCGCAACTC CGGCAGCAAC ACCAAGCGCC ACACAGCAAC CTGCCGCGCA GCAGCCTGCT
GCGCCTGCAT CGGGCGCGCC TACCACGCCG ACCGCTCCCG GTATCGCAGC TACACCGCCG
CACGGCGTAT CTCCCGGCGT CGCTGCCGCC GGAGCGGCCG TCGCTGGCGC CGCTCTCCTC
GCACCGGCAT TACCGAAAAC GGTGGCCAAA AAAGCGGCGA TGATCCGGCC GCAGAATCCA
TCGGCACCGG CGCAACAATC AAAGTCTCCG GCTCAAGCAG GACAACCCGG GGCCGCACAG
TCCGGCCAGC CGAACGCCGG TCGGGGACAG ACAGCACCTG CCTCACTCGA TCATAAGTTG
ACATCGCCGC CATTGCCGGG CGGTCCCGGC GGACAGCCGC TGCCTTCCGC GAACGGCAAA
CTACCGATCA AGGGCCAGCC ACAACATTCT TTGCACGCGC CGTCAGGCGG CAAGGCAGCT
GTGCGACCTC TACCAAGCCC CAGCGGTCAG CCGGGCTCTC CGGTGCAGTC GCCGAAGCGG
GACACCGGTG CAGAACCTGT TGCCAGTCCA CCGCAGACCT CGCCATCGCC TGATCATAAG
CCGGCCGCAC AACGATTGCA CGGCGCGCCA TCGCTCCCCT CCGTAAATGG CAAGCCACCG
GTTCCAGGTC AGCCACACCG TCCGCAAACG CAGCAAGAAA CGCTGTCGCC ACCCGTTGCA
TCGCCTGCGC AATCGGGTCG CAAAACTGTC GTCCGGCCGC CAACTAGCCC GCATGGTCAA
AGCGATCGAC AGGTTTCACC AGCGCACCCT GCGCGACAAA AGCCTGTTGC CTCACAGCCT
CGGACACGAG CCGCGTCGCC GCATATCGCA CGTCCGACAC CGCCGCCCGC TGTACGCTCC
GCCCCACGTC CGGTCTCGCG GCCAGCACCT CCGCCGAGGA TGCGGCCGTC GCCGCCACCC
CAAATGGCGC GCCCACCTGT TGCGCGTCCT ACGCCACCTC ACGTGACGCG ACCGACCCCA
CCACCCAAGG CCCATCCGAC ACCGCAGGCC ACTAAGCCGT GCGTCCACGG ACAACCGTGT
AAAAGATAG
|
|---|
| Protein sequence | MRVLACIALA LIALTSLSPT NAQQAEKRVA LVIGNAAYQS EALPTTANDA GLIAQTLQAA
GFDVVGARDL DQDTLRRTFR EFLDKVSASG PDTVAFIYLG GYGVQLEGEN YFVPVDAKLA
RDTDVPLETL RLSDYIRPLA ALKIKAGIVV LDAARANPFS GSDQPLASGL ALVEPEPHML
IAFNAAPGTA APQEKGPYGA YAQALAEMIR TGGLPLADVF DRTRLRVNEM TKGGEVPWSA
SKIEAPFMFF DRAPDAPPPT ASNEQIATMR ARPIRDLDAQ DAYVAALERD TLRGYLDFLA
AYPNDPMARR VRAIVAARRE AITWRYTRSV DTPQAYWSYL RRYPRGPHVA DAHRRLAYLA
AAFEPPPTFT AISYDVPPPP EDEIVYFRQP VLVFDDPDYG FAPPPPPPVF FLPPPPPDFV
VLAPPPPVFA AFVLPVPDYV PMPAYYSPPP YVAPPPQNVI YNNIHNTVVI NTTTNMVTIT
RPGGQPQTVT PAQALASQPV SATPAATPSA TQQPAAQQPA APASGAPTTP TAPGIAATPP
HGVSPGVAAA GAAVAGAALL APALPKTVAK KAAMIRPQNP SAPAQQSKSP AQAGQPGAAQ
SGQPNAGRGQ TAPASLDHKL TSPPLPGGPG GQPLPSANGK LPIKGQPQHS LHAPSGGKAA
VRPLPSPSGQ PGSPVQSPKR DTGAEPVASP PQTSPSPDHK PAAQRLHGAP SLPSVNGKPP
VPGQPHRPQT QQETLSPPVA SPAQSGRKTV VRPPTSPHGQ SDRQVSPAHP ARQKPVASQP
RTRAASPHIA RPTPPPAVRS APRPVSRPAP PPRMRPSPPP QMARPPVARP TPPHVTRPTP
PPKAHPTPQA TKPCVHGQPC KR
|
|---|
| |