Gene Nham_0615 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNham_0615 
Symbol 
ID4030989 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrobacter hamburgensis X14 
KingdomBacteria 
Replicon accessionNC_007964 
Strand
Start bp677143 
End bp678699 
Gene Length1557 bp 
Protein Length518 aa 
Translation table11 
GC content63% 
IMG OID637969147 
ProductEmrB/QacA family drug resistance transporter 
Protein accessionYP_575964 
Protein GI92116235 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0683738 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCGGCGG CCGCCGCACA TCCGGCCGCG GTCCCCGGCC TGCGCCGGAA CATGGTGACG 
ATCTGCGCGA TGACCGCGAC CATCATGCAG GCGCTCGACA CCACGATCGC CAACGTCGCG
CTGCCCTACA TGCAGGGATC GCTGTCGGCG TCGCAGGACC AGATCAACTG GGTGCTGACG
TCCTATATCG TAGCGGCGGC GATCATGACC GCGCCGGTCG GCTGGATCGC CAACCGCTTC
GGCCGCAAGC GCATCTTCAT CCTCTGCTCC GCCGGGTTCA CCCTCGCATC GGTGATGTGC
GGGCTTTCGC AGGACATCAC CCAGATGGTG CTGTTCCGCC TGCTGCAAGG CGTGTTCGGC
GCCGCGCTGG TGCCGCTGTC GCAGGCGGTG CTACTCGACA GCTACGCGCT GCACGAGCGC
GCCAAGGCGA TGGCGATCTG GGGCATGGGC GTGATGATGG GGCCGATCAT GGGCCCCTCG
CTCGGCGCCT GGCTGACCGA GACCTATAGC TGGCACTGGG TCTTCTTCGT CAATCTGCCG
TTCGGCCTGA TCACGGTCAT GGGCCTGATC ATCTTCATGG ACGAGACCAG GCTCGATACC
AAGCTGCAAT TCGACTGGTT CGGCTTCACC GCGCTCGCCA TCGGCATCGG CGCGCTGCAA
CTGGCGCTCG ATCGCGGCGA ACAGCTCGAT TGGCTGGAGT CATGGGAAAT CGTGATCGAG
TTCATCGTCT CGGCCGTCGG CTTCTACTAT TTCTTCGCGC ATTCGCTTAC CACGAAGCGC
CCGTTCGTCC AGTTCGTGAT CTTCAAGGAT CGCAATTTCG CGACCGCCCT CATTTTCATG
GCGGTGATCG GTGTGGTGCT GTTCTCGACC ATGGCGCTGG CCTCGCCGCT ATTCCAGAAC
GCCTATGGCT ACCCGATCCT GACCGCCGGT TTTCTGCTCG CAACGCGCGG CATCGGAACG
TTTGTGGCCA TGATGATGGT CAGCCGACTC ATGACCACCT TCGAGGCGCG GACCCTGATT
GCCGTCGGCC TCTCGCTGAT CGCGATCACG CTCTACGACA TGACCGGCTG GACCGCCGAT
ATTTCCGTGC GGGCCATCGC CATCAACAGC ATCGTCCAGG GTTACGGCAT CGGCCTCGTC
TTCGTGCCGA TGACCACCGC CGCCTTCATG ACGCTGCCCG ACCATCTGCG CACCGACGGC
ACCGCGATGC TGACGCTGGT GCGCAACGTC GCGAGTTCGA TCGGCATTTC CATCGTCATC
GCGCGACTGA CGAGCGGAAC CATTCGCGTC CATGCCGTGC TGGCCGAGCA CATCAACCCG
TTCAACGACG CATTGCAGAT GCCGAACGTC GCCGGCGCCA TCAACCTGAA CACCGACATG
GGCCGTGCGA TGATGGATCT GATCGTCAGT ACGCAGGCGC AGATCATCGC CTTCTCGCAG
GACTTCGAAC TGGTCGCGCT GGTGACGATC TGCGCGATTC CGCTGGTGCT GATGCTGAAA
TCGACCAAGG CGGCGATGCG CGCGCCGTCC ACGGATCATG CCACGGTGAT GGAATAG
 
Protein sequence
MPAAAAHPAA VPGLRRNMVT ICAMTATIMQ ALDTTIANVA LPYMQGSLSA SQDQINWVLT 
SYIVAAAIMT APVGWIANRF GRKRIFILCS AGFTLASVMC GLSQDITQMV LFRLLQGVFG
AALVPLSQAV LLDSYALHER AKAMAIWGMG VMMGPIMGPS LGAWLTETYS WHWVFFVNLP
FGLITVMGLI IFMDETRLDT KLQFDWFGFT ALAIGIGALQ LALDRGEQLD WLESWEIVIE
FIVSAVGFYY FFAHSLTTKR PFVQFVIFKD RNFATALIFM AVIGVVLFST MALASPLFQN
AYGYPILTAG FLLATRGIGT FVAMMMVSRL MTTFEARTLI AVGLSLIAIT LYDMTGWTAD
ISVRAIAINS IVQGYGIGLV FVPMTTAAFM TLPDHLRTDG TAMLTLVRNV ASSIGISIVI
ARLTSGTIRV HAVLAEHINP FNDALQMPNV AGAINLNTDM GRAMMDLIVS TQAQIIAFSQ
DFELVALVTI CAIPLVLMLK STKAAMRAPS TDHATVME