| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_0553 |
|---|
| Symbol | |
|---|
| ID | 4031301 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | + |
|---|
| Start bp | 612832 |
|---|
| End bp | 614517 |
|---|
| Gene Length | 1686 bp |
|---|
| Protein Length | 561 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637969083 |
|---|
| Product | ATP-dependent DNA ligase |
|---|
| Protein accession | YP_575903 |
|---|
| Protein GI | 92116174 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1793] ATP-dependent DNA ligase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACCGCT TCGCCGAACT GCTCGATCGC CTCGCCTATG AACCCGGCCG CAACAACAAG
CTGCGGCTGA TCACGGCGTA TTTTCGCGAT ACGCCGGATC CGGATCGCGG CTACGCGCTG
GCTGCGCTCA CCGGCGAATT GTCATTCAAA CACGCCAAGG CCGGTCTGGT TCGCAATCTG
ATCGCCGCGC GCGCCGATCC GGTGCTGTTC GCGCTGTCCT ATGATTATGT CGGCGATCTT
TCCGAGACGG TGGCGCTGAT GTGGCCGCAA ACTCCCTTCC CCCCGCGAAG CAGCGGGGAG
GGAGAAAAGA GCTGCCACAA CAACCTGCCC CCTCCAACTC TCACGGACGT TGTCACCACG
CTGCGGACGC TCGGCAAGGC CGACCTGCCG GCGCAACTTG CGCACTGGCT CGACGAACTC
GACGAGACCG GGCGCTGGGC GTTGCTGAAA CTCGTCACCG GCGCGATGCG GATCGGTGTG
TCCGCGCGGC TCGCCAAGAC CGCCGCGGCC GCGCTAGGGG ATAAGGACGC GCACGATGTC
GAGCTGATCT GGCCCGGCCT TGCGCCGCCT TATCTAGACC TGTTCGCATG GCTCGAAGGT
CGTGGCGACA AACCGGTCAA TCTCGATCCC GCGCCGTTCC GCCCGGTGAT GCTGGCGCAC
GCGATCGAGG ATGCCGATTT CGCGAATCTC GATGCCGCCG ATTTCACCGC CGAGTGGAAA
TGGGACGGCA TCCGCGTGCA GGCAGTCAGC GGCCGTGACG AGCATGGCGA TGTCGCGACC
CGGCTCTATT CGCGCACCGG CGAGGACATC ACCACCGGCT TTCCGGATTT GCTGCCGTCG
CTAAGGTTAC CCGGCGCGGT AGACGGCGAG TTGCTGGTGG TGCGTGACGG ACAAGTGCAA
TCGTTCAACG TCCTGCAACA GCGGTTGAAC CGGAAGGCGG TGACGCCCAG GCTGATGAAG
GAATTTCCGA TCCACCTGCG CGCCTACGAC CTGCTCGACG ACGGCGATAG CGATCTGCGC
GAGTTGCCGT TCGACGACCG GCGGCGACGG CTCGTTGATT TTATCGCAGC GCTTGACGAC
TCGCGTATCG ACCTCTCGCC GCAGGTGCCC TTCGCCACAT GGGGCGAACT CGCGGCAGCC
CGCGCCGACC CGGCCGCAGC CGGTGCGGAT GCCGACGCCG TCGAGGGCAT CATGCTGAAG
CGCCGCGACG CGCCGTATCT GCCGGGTCGC CCCAGGGGCC TGTGGTGGAA ATGGAAGCGC
GATCCGCATG TCATCGACGC CGTGCTGATG TATGCGCAGC GCGGCCACGG CAAGCGCTCG
TCCTACTACT CGGACTACAC CTTCGGAGTC TGGACCGCGA TCGATGGCGA CGAGCAACTG
GTGCCGGTCG GCAAGGCCTA TTTCGGTTTC ACCGACGAGG AACTGCTGCA GATCGACCGT
TTCGTCCGCC GCAACACCAC CGAGAGCTTC GGCCCGGTGC GCCATGTCGT GCATGAGCCC
GATCACGGGC TGGTGCTGGA AATCGCCTTC GAGGGATTGC AGCGTTCGGC CCGGCACAAA
TCCGGCGTGG CGATGCGCTT TCCCCGCATC AGCCGATTGC GCTGGGACAA ACCACCGCGC
GAGGCCGACC GGCTGGAGAC GCTGGAGCGG ATGCTTCGGT CCGGGGCCAC GATTCAGTCC
GCGTGA
|
|---|
| Protein sequence | MNRFAELLDR LAYEPGRNNK LRLITAYFRD TPDPDRGYAL AALTGELSFK HAKAGLVRNL
IAARADPVLF ALSYDYVGDL SETVALMWPQ TPFPPRSSGE GEKSCHNNLP PPTLTDVVTT
LRTLGKADLP AQLAHWLDEL DETGRWALLK LVTGAMRIGV SARLAKTAAA ALGDKDAHDV
ELIWPGLAPP YLDLFAWLEG RGDKPVNLDP APFRPVMLAH AIEDADFANL DAADFTAEWK
WDGIRVQAVS GRDEHGDVAT RLYSRTGEDI TTGFPDLLPS LRLPGAVDGE LLVVRDGQVQ
SFNVLQQRLN RKAVTPRLMK EFPIHLRAYD LLDDGDSDLR ELPFDDRRRR LVDFIAALDD
SRIDLSPQVP FATWGELAAA RADPAAAGAD ADAVEGIMLK RRDAPYLPGR PRGLWWKWKR
DPHVIDAVLM YAQRGHGKRS SYYSDYTFGV WTAIDGDEQL VPVGKAYFGF TDEELLQIDR
FVRRNTTESF GPVRHVVHEP DHGLVLEIAF EGLQRSARHK SGVAMRFPRI SRLRWDKPPR
EADRLETLER MLRSGATIQS A
|
|---|
| |